Locus 1434

Sequence ID 2L_DroMel_CAF1
Location 3,816,335 – 3,816,435
Length 100
Max. P 0.744284
window2337

overview

Window 7

Location 3,816,335 – 3,816,435
Length 100
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 89.05
Mean single sequence MFE -27.22
Consensus MFE -18.59
Energy contribution -19.63
Covariance contribution 1.04
Combinations/Pair 1.05
Mean z-score -2.54
Structure conservation index 0.68
SVM decision value 0.46
SVM RNA-class probability 0.744284
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3816335 100 - 22407834
AAAAUA-UC-AA-AACCCUGCUGUUGUUGUUUUUGUCGUCUGUAGUUGUUGCUAUUGACAAUAUUUAUGCAGCAGCAGCA-CCAACAGCAAUAUGGAAAAACGG-
......-..-..-...((((((((((((((...(((.(((.(((((....))))).))).))).....))))))))))))-(((.........)))......))- ( -28.10)
>DroSec_CAF1 5288 101 - 1
AAACUUGCCAAA-AACCUUGCUGUAG--GUUGUUGUCGUCUGUAGUUGUUGCUAUUGACAAUAUUUUUCCAGCAGCAGCAUCCACCAACAAUAAGGAAAAGCGG-
.......((...-.....((((((.(--(.((((((((...(((((....))))))))))))).....)).))))))((.(((...........)))...))))- ( -24.70)
>DroSim_CAF1 5271 97 - 1
AAAAUA-CC-AA-AACCCUGCUGUU---GUUGUUGUCGUCUGUAGUUGUUGCUAUUGACAAUAUUUAUGCAGCAGCAGCA-CCAACAGCAAUAUGGAAAAGCGG-
......-((-(.-.....(((((((---(.((((((.(.(((((..((((((....).)))))....)))))).))))))-.))))))))...)))........- ( -30.30)
>DroEre_CAF1 9617 97 - 1
AAAAUA-CC-AAAAACCCAGCUAUU---GUUGUUGUCGUCUGUAGUUGUUGCUAUUGACAAUAUUUAUGCAGCAGCAGCA-CCAACAGCAAUAUGGAAAAUCG--
......-..-......(((..((((---(((((((.....(((.((((((((...(((......))).)))))))).)))-.)))))))))))))).......-- ( -26.50)
>DroYak_CAF1 5266 98 - 1
AAAAUA-CC-AA-AACGCAGCUCUU---GUUGUUGUCGUCUGUAGUUGUUGCUAUUGACAAUAUUUAUGCAGCAGCAGCA-CCAACAGCAAAAUGGAAAAGCGGU
......-..-..-..(((...(((.---.(((((((.(..(((.((((((((...(((......))).)))))))).)))-.).)))))))...)))...))).. ( -26.50)
>consensus
AAAAUA_CC_AA_AACCCUGCUGUU___GUUGUUGUCGUCUGUAGUUGUUGCUAUUGACAAUAUUUAUGCAGCAGCAGCA_CCAACAGCAAUAUGGAAAAGCGG_
...................(((......((((((((....(((.((((((((................)))))))).)))....)))))))).......)))... (-18.59 = -19.63 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:34 2006