Locus 143

Sequence ID 2L_DroMel_CAF1
Location 431,925 – 432,035
Length 110
Max. P 0.940200
window222

overview

Window 2

Location 431,925 – 432,035
Length 110
Sequences 5
Columns 110
Reading direction forward
Mean pairwise identity 90.98
Mean single sequence MFE -22.00
Consensus MFE -17.58
Energy contribution -17.78
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -2.02
Structure conservation index 0.80
SVM decision value 1.28
SVM RNA-class probability 0.940200
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 431925 110 + 22407834
AAAUUUUACUGUUAGGCACUUAUCGAUAGCCAAAUCAAUAGAUCGGUUUUAAGAGUGCACGAAGAGUGAGCUUUAGUUAAACAAAACUACCAAACCAAAAUUAAAAAGCC
.....(((((.((..((((((......((((..(((....))).))))....))))))...)).)))))(((((((((......)))))................)))). ( -19.79)
>DroSec_CAF1 9476 109 + 1
AAAUUUUACUGUUAGGCACUUAUCGAUAGCCAAAUCGAUAGAUCGGUUC-CAGAGUGCACGAAUAGUGAGCUUAAGUUAAACAAAACUAGCAAACCAAAAUUAAAAAGCC
.....((((((((..((((((((((((......)))))).....(....-).))))))...))))))))(((..((((......)))))))................... ( -24.70)
>DroSim_CAF1 8462 109 + 1
AAAUUUUACUGUUAGGCACUUAUCGAUAGCCAAAUCGAUAGAUCGGUUC-CAGAGUGCACGAAUAGUGAGCUUAAGUUAAACAAAACUAGCAAACCAAAAUUAAAAAGCC
.....((((((((..((((((((((((......)))))).....(....-).))))))...))))))))(((..((((......)))))))................... ( -24.70)
>DroEre_CAF1 9311 101 + 1
A-AUUUUACUGUUAGGCACUUAUCGAUAGCCAAAUCGAUAGAUCGGUUC-AAGAGUGCACGAAGAGUGAGCAAAAGUUAAACAAAACUAC-------AAAUUGAAAAGCC
.-..((((((.((..((((((((((((......)))))).((.....))-..))))))...)).))))))....((((......))))..-------............. ( -20.40)
>DroYak_CAF1 8882 102 + 1
AAAUUUUACUGUUAGGCACUUAUCGAUAGCCAAAUCGAUAGAUCGGUUC-AAGAGUGCACGAAGAGUGAGCAAAAGUUAAACAAAACUAC-------AAAUUGAAAAGCC
....((((((.((..((((((((((((......)))))).((.....))-..))))))...)).))))))....((((......))))..-------............. ( -20.40)
>consensus
AAAUUUUACUGUUAGGCACUUAUCGAUAGCCAAAUCGAUAGAUCGGUUC_AAGAGUGCACGAAGAGUGAGCUUAAGUUAAACAAAACUACCAAACCAAAAUUAAAAAGCC
....((((((.((..((((((((((((......)))))))).((........))))))...)).))))))....((((......))))...................... (-17.58 = -17.78 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:17 2006