Locus 1421

Sequence ID 2L_DroMel_CAF1
Location 3,805,698 – 3,805,788
Length 90
Max. P 0.728299
window2312

overview

Window 2

Location 3,805,698 – 3,805,788
Length 90
Sequences 5
Columns 90
Reading direction reverse
Mean pairwise identity 100.00
Mean single sequence MFE -28.10
Consensus MFE -28.10
Energy contribution -28.10
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.38
Structure conservation index 1.00
SVM decision value 0.42
SVM RNA-class probability 0.728299
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3805698 90 - 22407834
UGCUGACUUUGCUGGUUACUACGGUGUUACUGUGUGUAUCGGGUAUAUAUCGGGUAUAUUCGCUACAGCCCACCGCCCGUCACCGGCUAA
..........((((((.((..(((((...(((((.....(((((((((.....))))))))).)))))..)))))...)).))))))... ( -28.10)
>DroSec_CAF1 14952 90 - 1
UGCUGACUUUGCUGGUUACUACGGUGUUACUGUGUGUAUCGGGUAUAUAUCGGGUAUAUUCGCUACAGCCCACCGCCCGUCACCGGCUAA
..........((((((.((..(((((...(((((.....(((((((((.....))))))))).)))))..)))))...)).))))))... ( -28.10)
>DroSim_CAF1 14985 90 - 1
UGCUGACUUUGCUGGUUACUACGGUGUUACUGUGUGUAUCGGGUAUAUAUCGGGUAUAUUCGCUACAGCCCACCGCCCGUCACCGGCUAA
..........((((((.((..(((((...(((((.....(((((((((.....))))))))).)))))..)))))...)).))))))... ( -28.10)
>DroEre_CAF1 16312 90 - 1
UGCUGACUUUGCUGGUUACUACGGUGUUACUGUGUGUAUCGGGUAUAUAUCGGGUAUAUUCGCUACAGCCCACCGCCCGUCACCGGCUAA
..........((((((.((..(((((...(((((.....(((((((((.....))))))))).)))))..)))))...)).))))))... ( -28.10)
>DroYak_CAF1 16711 90 - 1
UGCUGACUUUGCUGGUUACUACGGUGUUACUGUGUGUAUCGGGUAUAUAUCGGGUAUAUUCGCUACAGCCCACCGCCCGUCACCGGCUAA
..........((((((.((..(((((...(((((.....(((((((((.....))))))))).)))))..)))))...)).))))))... ( -28.10)
>consensus
UGCUGACUUUGCUGGUUACUACGGUGUUACUGUGUGUAUCGGGUAUAUAUCGGGUAUAUUCGCUACAGCCCACCGCCCGUCACCGGCUAA
..........((((((.((..(((((...(((((.....(((((((((.....))))))))).)))))..)))))...)).))))))... (-28.10 = -28.10 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:10 2006