Locus 142

Sequence ID 2L_DroMel_CAF1
Location 431,147 – 431,266
Length 119
Max. P 0.774630
window221

overview

Window 1

Location 431,147 – 431,266
Length 119
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 97.82
Mean single sequence MFE -34.31
Consensus MFE -33.39
Energy contribution -33.39
Covariance contribution 0.00
Combinations/Pair 1.06
Mean z-score -1.25
Structure conservation index 0.97
SVM decision value 0.54
SVM RNA-class probability 0.774630
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 431147 119 - 22407834
GACGAUCUGUUCGGUUACCGUUGACGUUUAGCGAUAUACUGAUUUUGCCCCUGCUCAGCGAAACCGAACACAACGAAGAUCGAGUCGAGAUUUCGUUAAAACUUAACGAAGCCGCGUUU
..((((((((((((((..((((((.((...((((..........))))....)))))))).)))))))).......))))))...((.(..(((((((.....)))))))..).))... ( -34.61)
>DroSec_CAF1 8699 119 - 1
GACGAUCUGUUCGGUUACCGUUGACGUUUAGCGAUAUACUGAUUUUGCCCCUGCGCAGCGAAACCGAACACACCGAAGAUCGAGUUGAGAUUUCGUUAAAACUUAACGAAGCCGCGUUU
..((((((((((((((..(((((.(((...((((..........))))....)))))))).)))))))).......))))))......(..(((((((.....)))))))..)...... ( -34.61)
>DroSim_CAF1 7685 119 - 1
GACGAUCUGUUCGGUUACCGUUGACGUUUAGCGAUAUACUGAUUUUGCCCCUGCGCAGCGAAACCGAACACAACGAAGAUCGAGUCGAGAUUUCGUUAAAACUUAACGAAGCCGCGUUU
..((((((((((((((..(((((.(((...((((..........))))....)))))))).)))))))).......))))))...((.(..(((((((.....)))))))..).))... ( -35.91)
>DroEre_CAF1 8506 119 - 1
GACGAUCUGUUCGGUUACCGUUGACGUUUAGCGAUAUACUGAUUUUGCCCCUGCGUAGCGAAACCGAACACAACGAAGAUCGAGUCGAGAUUUCGUUAAAACUCAACGAAGCCGCGUUU
..((((((((((((((..(((((.(((...((((..........))))....)))))))).)))))))).......))))))...((.(..((((((.......))))))..).))... ( -32.31)
>DroYak_CAF1 8094 119 - 1
GACGAUCUGUUCGGUUACCGUUGACGUUUAGCGAUAUACUGAUUUUGCCCCUGCGUAGCGAAACCGAACACAACGAAGAUCGAGUCGAGAUUUCGUUAAAACCUAACGAAGCCGCGUUU
..((((((((((((((..(((((.(((...((((..........))))....)))))))).)))))))).......))))))...((.(..(((((((.....)))))))..).))... ( -34.11)
>consensus
GACGAUCUGUUCGGUUACCGUUGACGUUUAGCGAUAUACUGAUUUUGCCCCUGCGCAGCGAAACCGAACACAACGAAGAUCGAGUCGAGAUUUCGUUAAAACUUAACGAAGCCGCGUUU
..((((((((((((((..(((((.(((...((((..........))))....)))))))).)))))))).......))))))...((.(..(((((((.....)))))))..).))... (-33.39 = -33.39 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:16 2006