Locus 1419

Sequence ID 2L_DroMel_CAF1
Location 3,803,142 – 3,803,259
Length 117
Max. P 0.740901
window2310

overview

Window 0

Location 3,803,142 – 3,803,259
Length 117
Sequences 5
Columns 118
Reading direction forward
Mean pairwise identity 93.21
Mean single sequence MFE -28.38
Consensus MFE -24.86
Energy contribution -25.10
Covariance contribution 0.24
Combinations/Pair 1.03
Mean z-score -1.31
Structure conservation index 0.88
SVM decision value 0.45
SVM RNA-class probability 0.740901
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3803142 117 + 22407834
AAAUGUUCAUUGGGUAAGCUCUUUAUGCAAGGCACGCGCAAAA-AAAAGAAAACUGUUGUUGCUGGAGAGUGUUGCCAGCUCUGAGCGACAAGUUCUAUAGAAAUUGAAAAACCUAAA
.........((((((..((((.....((..(((((((((((..-...((....))....))))......))).)))).))...))))..(((.(((....))).)))....)))))). ( -25.80)
>DroSec_CAF1 12397 116 + 1
GAAUGUUCAUUGGGUAAGCUCUUUAUGCAAGGCACGCGCAAAA--AAAGAAAACUGUUGUUGCUGGAGAGUGUUGCCAGCUCUGAGCGACAAUUUCUAUAGAAAUGGAAAAAGCUAAA
...((((((...(((((((((((((.((.......))((((..--..((....))....)))))))))))).))))).....))))))....(((((((....)))))))........ ( -27.30)
>DroSim_CAF1 12403 118 + 1
GAAUGUUCAUUGGGUAAGCUCUUUAUGCAAGGCACGCGCAAAAAAAAAGGAAACUGUUGUUGCUGGAGAGUGUUGCCAGCUCUGAGCGACAAGUUCUAUAGAAAUGGAAAAGGCUAAA
...((((((...(((((((((((((.((((.((....))........((....))....)))))))))))).))))).....)))))).....((((((....))))))......... ( -30.00)
>DroEre_CAF1 13558 118 + 1
GAAUGUUCAUUGGGUAAGCUCUUUAUGCAAGGCACGCGCAAAAAAAAAGAAAACUCUUGUUGCUGGAGAGUGUUGCCAGCUCUGAGCGCUAAAUUCUAUAAAAAUGGAAAAAGCUACA
....(((((...(((((((((((((.((((.((....)).......((((....)))).)))))))))))).))))).....)))))(((...((((((....))))))..))).... ( -30.90)
>DroYak_CAF1 13945 118 + 1
AAAUGUUCAUUGGGUAAGCUCUUUAUGCAAGGCACGCGCAAAAAAAAAGAAAACUCUUGUUGCUGGAGAGUGUUGCCAGCUCUGAGCACUAGAUUCUAUAGAAAUGGUAAAAGCUACA
....(((((...(((((((((((((.((((.((....)).......((((....)))).)))))))))))).))))).....)))))((((..(((....))).)))).......... ( -27.90)
>consensus
GAAUGUUCAUUGGGUAAGCUCUUUAUGCAAGGCACGCGCAAAAAAAAAGAAAACUGUUGUUGCUGGAGAGUGUUGCCAGCUCUGAGCGACAAAUUCUAUAGAAAUGGAAAAAGCUAAA
...((((((...(((((((((((((.((((.((....))........((....))....)))))))))))).))))).....)))))).....((((((....))))))......... (-24.86 = -25.10 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:08 2006