| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 3,789,803 – 3,789,893 |
| Length | 90 |
| Max. P | 0.617843 |
| Location | 3,789,803 – 3,789,893 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 80.97 |
| Mean single sequence MFE | -16.42 |
| Consensus MFE | -10.44 |
| Energy contribution | -10.63 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.617843 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3789803 90 - 22407834 UGAACAACAAUAACAAAAGAAAUG---AGACAAGCAAACAACAAUAUGUUAAAUAUU----GGGGAGUUGUUGCUGGAAUUCCCCCACUUUAGUAAA ............((.((((.....---..............((((((.....)))))----)(((((((.(....).)))))))...)))).))... ( -14.90) >DroSec_CAF1 258658 90 - 1 UGAACAACAAUAACAAAAGAAAUG---AGACAAGCAAACAACAAUAUGUUAAAUAUU----GGGGAGUUGUUGUUGGAAUUCCCCCACUUUAGUAAA ....((((((((((........((---.......))..(..((((((.....)))))----)..).))))))))))..................... ( -16.40) >DroSim_CAF1 259835 90 - 1 UGAACAACAAUAACAAAAGAAAUG---AGACAAGCAAACAACAAUAUGUUAAAUAUU----GGGGAGUUGUUGUUGGAAUUCCCCCACUUUAGUAAA ....((((((((((........((---.......))..(..((((((.....)))))----)..).))))))))))..................... ( -16.40) >DroEre_CAF1 265955 87 - 1 UGAACAACAAUAACAAAAGAAAUG---AGACAAACAAACAACAAUAUGUUAAAUAUU----GGGGAGUUGUUG---GAAUUCCCCCGCUUUAGUAAA ............((.((((.....---..............((((((.....)))))----)(((((((....---.)))))))...)))).))... ( -14.10) >DroWil_CAF1 398398 86 - 1 -GAGCGAUACUAGAGAGAGUAAGCUAACGACUGCCAAGCAACGACAUGUAAAAUGUUUUUUGUUGUUUUGUUG---GGG-------GCUUUUGUAAA -..((((((((......))))((((..((((....((((((((((((.....)))))....))))))).))))---..)-------))).))))... ( -20.40) >DroYak_CAF1 270128 90 - 1 UGAACAACAAUAACAAAAGAAAUG---ACACAAACAAACAACAAUAUGUUAAAUAUU----GGGGAGUUGUUGUUCGAAUUCCCCCACUUUCGUAAA .((((((((((..((.......))---...........(..((((((.....)))))----)..).))))))))))..................... ( -16.30) >consensus UGAACAACAAUAACAAAAGAAAUG___AGACAAGCAAACAACAAUAUGUUAAAUAUU____GGGGAGUUGUUGUUGGAAUUCCCCCACUUUAGUAAA ............((.((((.......................(((((.....)))))....((((((((........))))))))..)))).))... (-10.44 = -10.63 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:06 2006