Locus 1416

Sequence ID 2L_DroMel_CAF1
Location 3,786,696 – 3,786,788
Length 92
Max. P 0.511892
window2307

overview

Window 7

Location 3,786,696 – 3,786,788
Length 92
Sequences 3
Columns 92
Reading direction reverse
Mean pairwise identity 78.18
Mean single sequence MFE -12.71
Consensus MFE -7.35
Energy contribution -8.13
Covariance contribution 0.78
Combinations/Pair 1.06
Mean z-score -1.85
Structure conservation index 0.58
SVM decision value -0.04
SVM RNA-class probability 0.511892
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3786696 92 - 22407834
AAGCUUUGAGACUCGAGCCCAAAAGUAUAGCAAAGUUAUAUCCUCUUUUAACUUUGUUUCAAGAAUCUCCCAGUUCCUUUCUAGUUUCCAUU
.......((((((.(((.......(...((((((((((..........)))))))))).)..((((......))))..))).)))))).... ( -15.40)
>DroSec_CAF1 255631 82 - 1
AAGCUUUGAGAUUCAAGCCCAAAAG----------UUCUAUCCUCUUUUUACUUUAUUGUUAGAAUCUUCCAGUUUCUUUCUAGUUCCCAAU
(((((..(((((((.(((...((((----------(..............)))))...))).)))))))..)))))................ ( -12.74)
>DroSim_CAF1 256741 91 - 1
AAGCUUUGAGAUUCAAUCUUGAAAGUAUGGCAAA-UUAUAUCCUCUUUUCACUUCACUUUAAGAAUCUCCCAGUUCCUUUCUAAUUCCCAUU
.((((..(((((((.......(((((..((..((-............))..))..)))))..)))))))..))))................. ( -10.00)
>consensus
AAGCUUUGAGAUUCAAGCCCAAAAGUAU_GCAAA_UUAUAUCCUCUUUUAACUUUAUUUUAAGAAUCUCCCAGUUCCUUUCUAGUUCCCAUU
.((((..(((((((.......(((((........................))))).......)))))))..))))................. ( -7.35 =  -8.13 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:05 2006