Locus 1413

Sequence ID 2L_DroMel_CAF1
Location 3,781,462 – 3,781,555
Length 93
Max. P 0.515364
window2304

overview

Window 4

Location 3,781,462 – 3,781,555
Length 93
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 81.92
Mean single sequence MFE -24.93
Consensus MFE -12.78
Energy contribution -12.78
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.42
Structure conservation index 0.51
SVM decision value -0.04
SVM RNA-class probability 0.515364
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3781462 93 + 22407834
GC---------UGCUGCUAUCCAACAGCAAGUGGACGCCAUUGCCAAGAUGGCCGCCAUAAACAUAAAAAAUU---AAUGCAGCCAGAUCGCAUACACGAAAGUU
((---------(((((((.......)))).((((..((((((.....))))))..))))..............---...)))))............((....)). ( -25.50)
>DroSec_CAF1 251097 93 + 1
GC---------UGCUGCUAUCCAACAACAAGUGGACGCCAUUGCCAAGAUGGCCGCCAUAAACAUAAAAAAUU---AAUGCAGCCAGAUGGCAUGCACGGAAGUU
((---------....))..(((........((((..((((((.....))))))..))))..............---..(((((((....))).)))).))).... ( -26.80)
>DroSim_CAF1 250480 93 + 1
GC---------UGCUGGUAUCCAACAACAAGUGGACGCCAUUGCCAAGAUGGCCGCCAUAAACAUAAAAAAUU---AAUGCAGCCAGAUCGCAUGCACGAAAGUU
((---------((((((...))).......((((..((((((.....))))))..))))..............---...)))))............((....)). ( -23.20)
>DroEre_CAF1 258184 93 + 1
GC---------UGCUGCUAUCCAACAACAAGUGGACGCCAUUGCCAAGAUGGCCGCCAUAAACAUAAAAAAUU---AAUGCAUGCCCGUAGCAAACACGAACGUU
((---------(((.((.............((((..((((((.....))))))..))))...(((........---.)))...))..)))))............. ( -19.70)
>DroYak_CAF1 262202 102 + 1
GCUGCGGCUGCUGCUGCUAUCCAACAACAAGUGGACGCCAUUGCCAAGAUGGCCGCCAUAAACAUAAAAAAUU---AAUGCAAGCAGUUCGCAAGCACGAAAGUU
((((((((((((((((........))....((((..((((((.....))))))..))))..............---...)).))))).)))).)))((....)). ( -32.20)
>DroPer_CAF1 270376 84 + 1
GC---------UU---AUGUCCAACAACAAGUGGACGCCAUUGCCAAGAUGGCGGCCAUAAACAUAAAAAAUACACAAUAAUAUCAGUGGGAGAGC---------
((---------((---...(((........((((.(((((((.....))))))).))))..............(((..........))))))))))--------- ( -22.20)
>consensus
GC_________UGCUGCUAUCCAACAACAAGUGGACGCCAUUGCCAAGAUGGCCGCCAUAAACAUAAAAAAUU___AAUGCAGCCAGAUCGCAAGCACGAAAGUU
..............................((((..((((((.....))))))..)))).............................................. (-12.78 = -12.78 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:02 2006