Locus 1410

Sequence ID 2L_DroMel_CAF1
Location 3,775,717 – 3,775,822
Length 105
Max. P 0.676762
window2301

overview

Window 1

Location 3,775,717 – 3,775,822
Length 105
Sequences 4
Columns 105
Reading direction forward
Mean pairwise identity 91.83
Mean single sequence MFE -22.68
Consensus MFE -20.05
Energy contribution -20.80
Covariance contribution 0.75
Combinations/Pair 1.00
Mean z-score -1.49
Structure conservation index 0.88
SVM decision value 0.30
SVM RNA-class probability 0.676762
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3775717 105 + 22407834
UCCCGAAGGGAUUAAAACACACAGCCUGGCCAAGAGCAUUCCGCACUGCACAGCGGAUCUCGGCGACCCUUUUUCCAUUCCUUCACCCGUAAUACCCAUACCCAU
....((((((((..(((.....((..(.(((..(((...(((((........))))).)))))).)..)).)))..))))))))..................... ( -23.30)
>DroSec_CAF1 245466 103 + 1
UCCCGAAGGGAUUAAAAC--ACAGCCUGGCCAAGAGCAUUCCGCACUGCACAGCGGAUCUCGGCGACCCUUUUUCCAUUCCUUCACCCGUAAUACCCAUACCCAU
....((((((((..(((.--..((..(.(((..(((...(((((........))))).)))))).)..)).)))..))))))))..................... ( -24.60)
>DroSim_CAF1 244779 103 + 1
UCCCGAAGGGAUUAAAAC--GCAGCCUGGCCAAGAGCAUUCCGCACUGCACAGCGGAUCUCGGCGACCCUUUUUCCAUUCCUUCACCCGUAAUACCCAUACCCAU
....((((((((..(((.--..((..(.(((..(((...(((((........))))).)))))).)..)).)))..))))))))..................... ( -24.60)
>DroYak_CAF1 256482 94 + 1
UCCCGAAGGGAUUAAAA---ACUGACUGGCCAAGAGCAUUCCGCACUGCAAAGCCGAUCUCGGCGACCCUUUUUCCAUACCUUCACCCGUAAUACCC--------
....(((((........---........((..((.((.....)).))))...((((....))))...............))))).............-------- ( -18.20)
>consensus
UCCCGAAGGGAUUAAAAC__ACAGCCUGGCCAAGAGCAUUCCGCACUGCACAGCGGAUCUCGGCGACCCUUUUUCCAUUCCUUCACCCGUAAUACCCAUACCCAU
....((((((((..(((.....((..(.(((..(((...(((((........))))).)))))).)..)).)))..))))))))..................... (-20.05 = -20.80 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:59 2006