Locus 141

Sequence ID 2L_DroMel_CAF1
Location 430,695 – 430,812
Length 117
Max. P 0.620272
window220

overview

Window 0

Location 430,695 – 430,812
Length 117
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 86.23
Mean single sequence MFE -22.85
Consensus MFE -17.30
Energy contribution -16.62
Covariance contribution -0.68
Combinations/Pair 1.17
Mean z-score -1.64
Structure conservation index 0.76
SVM decision value 0.18
SVM RNA-class probability 0.620272
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 430695 117 - 22407834
CUUGUAGUUUACAUUGUAUAUUACAAUUACAUU---AUGAGUUCUAUCUUUUGGCAUUCACUUUUUGCCAAACUAUGGCGGAAGCCUAUUGGAUUCAAAUCUAGCUUUCAGUAUCCCUGC
...((((..(((((((((...))))))......---.(((((((.....(((((((.........)))))))....(((....)))....))))))).............)))...)))) ( -27.00)
>DroSec_CAF1 8188 117 - 1
CUUGUAGUUUAUUUACUAUCUUAUUCCUACAUU---AUUAGUUCUAUCUUUUGGCAUUCACUUUUUGCAAAACUAUGGCGGAAGCCUGUUAGAUUCGAAUCUAGCUUUCAGUAUCCCUGC
...(((((((....((((...............---..))))...........(((.........))).)))))))(((....))).(((((((....)))))))...(((.....))). ( -19.93)
>DroSim_CAF1 7174 117 - 1
CCUGUAGUUUAUUUACUAUCUUAUUCCUACAUU---AUAAGGUUUAUCAUUUGGCAUUCACCUUUUGCAAAACUAUGGCGGAAGCCUGUUGGAUUCAAAUCUAGCUUCCAGUAUCCCUGC
.(((((((((.......(((((((.........---)))))))..........(((.........))).))))))))).((((((....(((((....)))))))))))........... ( -22.90)
>DroEre_CAF1 7961 120 - 1
CUUGCAGUUUAUUUACUAUCUUAUUCUAACAUUAUUAUUAGUUUUAUCUUUCGGCAUUCACUUUUUGCGAAAUUGUGGCGGUAGCCUGUUAGAUUCAAAUCUAGCUUUCAGUAUCCCUGC
...((((......((((....................................(((.........)))((((....(((....))).(((((((....)))))))))))))))...)))) ( -19.30)
>DroYak_CAF1 7596 120 - 1
CUUGUAGUUUACUUGCAAUCUUAUUCUAACAUUAUUAUUAGAUCUAUCUUUCGGCAUUCACUUUUUGCUAAACUAUGGCGGAAGCCUGUUGGAUUCAAAUCCAGCUCUCAGCAUCCCUGC
...(((((((..............(((((........)))))..........((((.........)))))))))))(((....))).(((((((....))))))).....(((....))) ( -25.10)
>consensus
CUUGUAGUUUAUUUACUAUCUUAUUCUUACAUU___AUUAGUUCUAUCUUUUGGCAUUCACUUUUUGCAAAACUAUGGCGGAAGCCUGUUGGAUUCAAAUCUAGCUUUCAGUAUCCCUGC
...(((((((..............................(......).....(((.........))).)))))))(((....))).(((((((....)))))))...(((.....))). (-17.30 = -16.62 +  -0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:15 2006