Locus 1409

Sequence ID 2L_DroMel_CAF1
Location 3,774,638 – 3,774,738
Length 100
Max. P 0.994958
window2300

overview

Window 0

Location 3,774,638 – 3,774,738
Length 100
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 91.65
Mean single sequence MFE -18.76
Consensus MFE -15.96
Energy contribution -16.80
Covariance contribution 0.84
Combinations/Pair 1.04
Mean z-score -2.25
Structure conservation index 0.85
SVM decision value 2.53
SVM RNA-class probability 0.994958
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3774638 100 + 22407834
--AAGAUUUGUGUGCAAUUAGCAUAAUCCAAUUGCAUUUGAAUUAAUAAAUCAUAGUCUUAGUGCUUCUACACUUAUUAGCAUAAACUCUUCCAAUAAAUAA
--(((((((((((((((((.(......).))))))..................((((...((((......)))).))))))))))).))))........... ( -13.70)
>DroSec_CAF1 244410 99 + 1
---UGAUUUGUGUGCAAUUAGCAUAAUCCAAUUGCAUUUGGAUUAAUAAAUCAUAGUCUUAGUGCUUCUACACUUAUUAGCAUAAACUCUUCCAAUAAAUAA
---((((((((.(((.....)))((((((((......))))))))))))))))........(((((..((....))..)))))................... ( -19.60)
>DroSim_CAF1 243685 102 + 1
UCAUGAUUUGUGUGCAAUUAGCAUAAUCCAAUUGCAUUUGGAUUAAUAAAUCAUAGUCUUAGUGCUUCUACACUUAUUAGCAUAAACUCUUCCAAUAACUAA
..(((((((((.(((.....)))((((((((......))))))))))))))))).......(((((..((....))..)))))................... ( -21.10)
>DroEre_CAF1 251559 101 + 1
UCAUGAUUUGUGUGCAAUUAGCAUAAUCCAAUUGCAUUUGGAUUAAUAAAUUAUACUCGUACUGCUGCUACUCUUAUUAGCAUAAACUCUCCC-AUAAAUAA
..(((((((((.(((.....)))((((((((......)))))))))))))))))...........(((((.......)))))...........-........ ( -18.50)
>DroYak_CAF1 255359 102 + 1
UCAUGAUUUGUGUGCCAUUAGCAUAAUCCAAUUGCAUUAGGAUUAAUAAAUCAUAGUCUUGGUGCUGCUACACCCAUUAGCAUAAACUCUACCAAUAAAUAA
...((..((((((.......))))))..))...((((((((((((........))))))))))))(((((.......))))).................... ( -20.90)
>consensus
UCAUGAUUUGUGUGCAAUUAGCAUAAUCCAAUUGCAUUUGGAUUAAUAAAUCAUAGUCUUAGUGCUUCUACACUUAUUAGCAUAAACUCUUCCAAUAAAUAA
..(((((((((.(((.....)))((((((((......))))))))))))))))).......(((((............)))))................... (-15.96 = -16.80 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:58 2006