Locus 1402

Sequence ID 2L_DroMel_CAF1
Location 3,742,306 – 3,742,402
Length 96
Max. P 0.619626
window2289

overview

Window 9

Location 3,742,306 – 3,742,402
Length 96
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 95.72
Mean single sequence MFE -20.29
Consensus MFE -19.18
Energy contribution -18.78
Covariance contribution -0.40
Combinations/Pair 1.08
Mean z-score -1.11
Structure conservation index 0.95
SVM decision value 0.18
SVM RNA-class probability 0.619626
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3742306 96 + 22407834
GCUGCUGUUCGCAUAUUGUCGCGUGUUUAUUACAAUGCAAAGUGCAACAAAACGGACAGAAAAAAGCAAACUAA-AAUGCGAAACCUCGAGGCAAUA
(((....(((((((.(((((.(((((.....))..(((.....))).....)))))))).....((....))..-.))))))).......))).... ( -19.50)
>DroSec_CAF1 204425 95 + 1
GAUGCUGUUCGCAUAUUGUCGCGUGUUUAUUACAAUGCAAAGUGCAA-AAAACGGGCAGAAAGAAGCAAACUAA-AAUGCGAAACCCGGAGGCAAUA
..((((....((((.((((....(((.....)))..)))).))))..-....((((.........(((......-..)))....))))..))))... ( -19.82)
>DroSim_CAF1 211561 95 + 1
GCUGCUGUUCGCAUAUUGUCGCGUGUUUAUUACAAUGCAAAGUGCAA-AAAACGGGCAGAAAGAAGCAAACUAA-AAUGCGAAACCCGGAGGCAAUA
(((.((((((((((.(((.....(((((.......(((...((....-...))..))).....)))))...)))-.)))))))...))).))).... ( -21.10)
>DroEre_CAF1 218462 95 + 1
GCUGCUGUUCGCAUAUUGUCGCGUGUUUAUUACAAUGCAAAGUGCAA-AAAACGGGCAAAAACAAGCAAACUAA-AAUGCGAAACCCCGAGGCAAUA
..((((....((((.((((....(((.....)))..)))).))))..-....((((.........(((......-..))).....)))).))))... ( -19.84)
>DroYak_CAF1 222294 96 + 1
GCUGCUGUUCGCAUAUUGUCGCGUGUUUAUUACAAUGCAAAGUGCAA-AAAACGGGCAAAAAUAAGCAAACUAAAAAUGCGAAACCCCGAGGCAAUA
(((....(((((((.((......((((((((....(((...((....-...))..)))..)))))))).....)).))))))).......))).... ( -21.20)
>consensus
GCUGCUGUUCGCAUAUUGUCGCGUGUUUAUUACAAUGCAAAGUGCAA_AAAACGGGCAGAAAGAAGCAAACUAA_AAUGCGAAACCCCGAGGCAAUA
..((((.(((((((.(((((.(((((.....))..(((.....))).....)))))))).....((....))....))))))).......))))... (-19.18 = -18.78 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:47 2006