Locus 1396

Sequence ID 2L_DroMel_CAF1
Location 3,716,356 – 3,716,448
Length 92
Max. P 0.640806
window2277

overview

Window 7

Location 3,716,356 – 3,716,448
Length 92
Sequences 6
Columns 92
Reading direction reverse
Mean pairwise identity 81.62
Mean single sequence MFE -26.30
Consensus MFE -18.07
Energy contribution -18.07
Covariance contribution 0.00
Combinations/Pair 1.14
Mean z-score -1.60
Structure conservation index 0.69
SVM decision value 0.22
SVM RNA-class probability 0.640806
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3716356 92 - 22407834
GGCCUGCAACUUGAGCAGUUCCUUUUGGCUGUCCUUGGCCUGAAGGUGGAACACACUUUGCUGGGGGGAGAUACAAGUAAAUGGAGUACAAA
...((((.......))))((((.((((.((.((((..((...((((((.....))))))))..)))).))...)))).....))))...... ( -27.80)
>DroPse_CAF1 202606 77 - 1
GGCUUGCAGUUUGAGCAUUUCCUUUUGGCUGUCCUUGGCCUGGAGGUGAAACACACUUUGCUGCAAGGCGA--------------AGA-AGA
(.((((((((..((((((((((....((((......)))).))))))).......))).)))))))).)..--------------...-... ( -27.61)
>DroSim_CAF1 187548 92 - 1
GGCCUGCAACUUGAGCAGUUCCUUUUGGCUGUCCUUGGCCUGAAGGUGGAACACACUUUGCUGGGGGGAGAUACAAGUAAAUAGAUUAAAAA
(..((((.......))))..)..((((.((.((((..((...((((((.....))))))))..)))).))...))))............... ( -26.20)
>DroEre_CAF1 191820 78 - 1
GGCCUGCAACUUGAGCAGUUCCUUUUGGCUGUCCUUCGCCUGAAGGUGGAACACACUUUGCUGGAGGGAGA--------------UUAAAAA
...((((.......))))(((((((..(((((..((((((....))))))..)))....))..))))))).--------------....... ( -25.50)
>DroYak_CAF1 192253 78 - 1
GGCCUGCAACUUGAGCAGUUCCUUUUGGCUGUCCUUGGCCUGAAGGUGGAACACACUUUGCUGGAGGGAGA--------------UUAUAAA
...((((.......))))(((((((..((.((.....))...((((((.....))))))))..))))))).--------------....... ( -23.10)
>DroPer_CAF1 202553 77 - 1
GGCUUGCAGUUUGAGCAUUUCCUUUUGGCUGUCCUUGGCCUGGAGGUGAAACACACUUUGCUGCAAGGCGA--------------AGA-AGA
(.((((((((..((((((((((....((((......)))).))))))).......))).)))))))).)..--------------...-... ( -27.61)
>consensus
GGCCUGCAACUUGAGCAGUUCCUUUUGGCUGUCCUUGGCCUGAAGGUGGAACACACUUUGCUGGAGGGAGA______________UUA_AAA
...((((.......))))((((((..(((.((.....))...((((((.....)))))))))..))))))...................... (-18.07 = -18.07 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:36 2006