Locus 1394

Sequence ID 2L_DroMel_CAF1
Location 3,709,611 – 3,709,703
Length 92
Max. P 0.677828
window2273

overview

Window 3

Location 3,709,611 – 3,709,703
Length 92
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 80.86
Mean single sequence MFE -22.85
Consensus MFE -16.14
Energy contribution -16.62
Covariance contribution 0.48
Combinations/Pair 1.23
Mean z-score -1.48
Structure conservation index 0.71
SVM decision value 0.30
SVM RNA-class probability 0.677828
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3709611 92 - 22407834
CACUUAUCGCGCUAGCUGAGAAAUCCGGAAACGAUGUGAGGAGCUGUAUAUCAUCCAUGCAGUUUUUUAAGUGAGUAAUUAGCAAAUACUUA----
..............(((((....((((....))...(((((((((((((.......)))))))))))))...))....))))).........---- ( -21.90)
>DroVir_CAF1 242136 96 - 1
CGCUUAUUGCAUUGGCUGAGAAAUCGGGCAACGAUGUGCGCAGCUGCAUCUCAUCUAUGCAGUUCUUCAAGUAAGUUAAGAUGCAAAACUUAUCAG
(((.(((((..(((.((((....)))).)))))))).))).((((((((.......))))))))......(((((((.........)))))))... ( -25.80)
>DroSec_CAF1 171900 92 - 1
CACUUAUCGCGCUAGCUGAGAAAUCCGGAAACGAUGUGAGAAGCUGUAUUUCAUCCAUGCAGUUUUUUAAGUGAGUAAUUACCAAAUAUUUA----
(((((((((((......((....))((....)).)))))((((((((((.......)))))))))).))))))...................---- ( -21.90)
>DroEre_CAF1 185280 92 - 1
CACUUAUCGCUCUAGCUGAGAAAUCCGGAAACGAUGUGAGAAGCUGUAUAUCAUCCAUGCAGUUUUUUAAGUGGGUAAAUACGUAAUAUUUA----
((((((((((.......((....))((....))..))))((((((((((.......)))))))))).))))))...................---- ( -21.80)
>DroYak_CAF1 185645 92 - 1
CUCUUAUCGCUCUAGCGGAGAAAUCCGGAAACGAUGUGAGGAGCUGUAUAUCAUCCAUGCAGUUUUUUAAGUGAGCAACUACUUCAUAUUUA----
........((((...((((....))))...((....(((((((((((((.......))))))))))))).))))))................---- ( -25.50)
>DroMoj_CAF1 249655 88 - 1
CACUCAUCGCUUUGGCUGAGAAAUCGGGCAACGAUGUGCGCAGCUGCAUCUCAACCAUGCAAUUCUUUAAGUAAGUUAAGAGGAAAUA--------
..(((...((..(((.(((((.((((.....)))).((((....))))))))).))).))....(((.....)))....)))......-------- ( -20.20)
>consensus
CACUUAUCGCUCUAGCUGAGAAAUCCGGAAACGAUGUGAGAAGCUGUAUAUCAUCCAUGCAGUUUUUUAAGUGAGUAAAUACGAAAUAUUUA____
((((((((((....)).((....)).(....)))))(((((((((((((.......)))))))))))))))))....................... (-16.14 = -16.62 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:32 2006