Locus 1392

Sequence ID 2L_DroMel_CAF1
Location 3,700,164 – 3,700,278
Length 114
Max. P 0.988818
window2270

overview

Window 0

Location 3,700,164 – 3,700,278
Length 114
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 73.61
Mean single sequence MFE -20.10
Consensus MFE -5.54
Energy contribution -9.14
Covariance contribution 3.60
Combinations/Pair 1.20
Mean z-score -2.35
Structure conservation index 0.28
SVM decision value 2.14
SVM RNA-class probability 0.988818
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3700164 114 - 22407834
CUAAUAUUGUCCAGAUCAAAAUAUAUACUUUCAUCCUCGAUGUGUGUAUGUUUUGAAUCAACGUUAAAAAACUGAGGUAAAACUGCCAAUAUCGGGCAAUAAGCUUACCUUUAU
....((((((((.(((((((((((((((...((((...)))).)))))))))))).)))................((((....))))......))))))))............. ( -31.10)
>DroSec_CAF1 162777 113 - 1
CUAAUAUUGUACAGAUCAAAAUAUAUACUUUCAUCCUCAAUGUGUGUAUAUUUUGAAUCAACGUUAAA-AACUCUGCUGAAACUACCAACAUCGGGCAAUAAGUUUACCUUUAU
....((((((.(((((((((((((((((...(((.....))).)))))))))))))......((....-.)))))).........((......))))))))............. ( -20.90)
>DroSim_CAF1 171568 113 - 1
CUAAUAUUGUACAGAUCAAAAUAUAUACUUUCAUCCUCAAUGUGUGUAUAUUUUGAAUCAACGUUAAA-AACUCUGCUGAAACUACCAACAUCGGGCAAUAAGUUUACCUUUAU
....((((((.(((((((((((((((((...(((.....))).)))))))))))))......((....-.)))))).........((......))))))))............. ( -20.90)
>DroEre_CAF1 173490 89 - 1
CUAAUAUGGCCCAGAUCAAAACAAAUACUUUCAUCCUCAAUCUAUCA--------------------UCCACUU---UGAAUCAA--CGUAUUUGGCUAAAAGCUCACCGUUAA
.....((((............(((((((.((((..............--------------------.......---))))....--.)))))))((.....))...))))... (  -8.40)
>DroYak_CAF1 174931 108 - 1
CUAAUAUUGUGCAGAUCAAACCAACUACUUUCAUCCUCAAUGUGUGAAUACUU------AAAGUUAAACCACUGAAGUGAAACUAGCAAUAUCGGGCUAAAAGCCCAUCUUUAA
...(((((((..((...............((((..(.....)..))))(((((------..(((......))).)))))...)).))))))).((((.....))))........ ( -19.20)
>consensus
CUAAUAUUGUACAGAUCAAAAUAUAUACUUUCAUCCUCAAUGUGUGUAUAUUUUGAAUCAACGUUAAA_AACUCAGCUGAAACUACCAAUAUCGGGCAAUAAGCUUACCUUUAU
...............(((((((((((((...(((.....))).))))))))))))).....................................((((.....))))........ ( -5.54 =  -9.14 +   3.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:27 2006