Locus 1391

Sequence ID 2L_DroMel_CAF1
Location 3,694,555 – 3,694,675
Length 120
Max. P 0.928152
window2269

overview

Window 9

Location 3,694,555 – 3,694,675
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 64.77
Mean single sequence MFE -32.20
Consensus MFE -14.05
Energy contribution -13.22
Covariance contribution -0.83
Combinations/Pair 1.47
Mean z-score -1.92
Structure conservation index 0.44
SVM decision value 1.19
SVM RNA-class probability 0.928152
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3694555 120 + 22407834
UCCAAAACAGCCGCCGUAUUCAAAUUUCUGGCAAACAUUUAUGUGUGGAUAGUAACUGAACUUUUCAAAACUUCCAGCGCACUUAAUGAAAUCAUUGCCAUUUACUGCAGGCGGUUGUCC
......((((((((((((...(((....((((((.((((..((((((((.(((...(((.....)))..))))))).))))...))))......)))))))))..))).))))))))).. ( -31.90)
>DroPse_CAF1 184404 114 + 1
GCCACCGCAGCCGCCAUAAAUGAACCUCACGCAUUCCU--UUCC----AUUGUAGGACCAACUGGGAAAGUUGGCCAUACAGGCCUUAUUUCCAUCUCCAUUUUUGGAAUGUGGAAGUGC
(((...((....))........................--....----..((((((.((((((.....)))))))).)))))))..(((((((((.((((....))))..))))))))). ( -31.80)
>DroSec_CAF1 157261 120 + 1
UCCAAGACAGCCGCCGUAUUCAAAUUUUCGGCAAGUAUUUAUAUGUGGAUAGUAAAUGAACUUUUCAAAACUUCCAGCGCACUUAAUGAAAUCAUUGCCAUUUACUUCAGGCGGUUGUCC
.....(((((((((((....)........(((.............((((.(((...(((.....)))..)))))))........((((....)))))))..........)))))))))). ( -30.40)
>DroSim_CAF1 166226 120 + 1
UCCAAGACAGCCGCCGUAUUCAAAUUUUCGGCAAGAAUUUAUAUGUGGAUAGUAACUGAACUUUUCAAAACUUCCAGCGCACUUAAUGAAAUCGUUGCCAUUUGCUGCAGGCGGUUGUCC
.....(((((((((((((..(((((....(((((((.(((((.((((((.(((...(((.....)))..))))))...)))....))))).)).)))))))))).))).)))))))))). ( -35.00)
>DroEre_CAF1 165003 120 + 1
UCCAUUACAGCCGCCGUAAUCGAACUUUAAGCACGAUUGAAUCCGCGGAUGGUAACUGUACCUAUCAAAACUGCCGAUGCAGGUGAUGACACGAUCGCCAUUUUUUGCAGGCUGUUGUCC
......(((((.(((.((((((..(.....)..)))))).....((((((((..(.(((...(((((...((((....)))).)))))..))).)..)))))...))).))).))))).. ( -32.30)
>DroPer_CAF1 184373 114 + 1
GCCACCGCAGCCGCCAUAAAUGAACCUCACGCAUUCCU--UUCC----AUUGUAGGACCAACUGGGAAAGUUGGCCAUACAGGCCUUAUUUCCAUCUCCAUUUUUGGAAUGUGGAAGUGC
(((...((....))........................--....----..((((((.((((((.....)))))))).)))))))..(((((((((.((((....))))..))))))))). ( -31.80)
>consensus
UCCAACACAGCCGCCGUAAUCAAACUUCAGGCAAGCAUUUAUCCGUGGAUAGUAACUGAACCUUUCAAAACUGCCAACGCACGUAAUGAAACCAUCGCCAUUUUCUGCAGGCGGUUGUCC
.....((((((((((....................................((....(((.((.....)).)))....))................((........)).)))))))))). (-14.05 = -13.22 +  -0.83)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:25 2006