| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 3,690,842 – 3,690,938 |
| Length | 96 |
| Max. P | 0.856109 |
| Location | 3,690,842 – 3,690,938 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 75.78 |
| Mean single sequence MFE | -38.95 |
| Consensus MFE | -22.30 |
| Energy contribution | -23.00 |
| Covariance contribution | 0.70 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.856109 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3690842 96 + 22407834 UCUCCAUUCCAGAGCCUGUGCUCAUGCUGCUCCCUGAAG---CCCCCGCCGCCACCGGG---------------CUCAUCGGUGGUGGCU---CCACUGAGCAUUCCGGUCAGCAGC ...........((((....))))..((((((.((.((((---(....(((((((((((.---------------....)))))))))))(---(....)))).))).))..)))))) ( -39.90) >DroPse_CAF1 178872 105 + 1 UCGCCCUUCCAGAGCCUGUGCUCUUGCUGCUCUCUGAAG---CCGCCACCGCUGCCGCCCUCCUC---------CUCCUCGGGGGUGGCACCCUCGAUGAGUGUCCCUGUGAGCAGC ..........(((((....))))).(((((((.(....(---.(((((.((.((((((((.((..---------......))))))))))....)).)).))).)...).))))))) ( -39.20) >DroEre_CAF1 158343 96 + 1 UCUCCAUUCCAGAGCCUGUGCUCGUGCUGCUCCCUGAAG---CCUCCGCCGCCGCCGGG---------------CUCAUCGGUGGUGGCU---CCACUGAGCAUUCCGGUCAGCAGC ...........((((....))))..((((((.((.(((.---.(((.(((((((((((.---------------....))))))))))).---.....)))..))).))..)))))) ( -40.10) >DroYak_CAF1 163708 96 + 1 UCUCCAUUCCAGAGCCUGUGCUCGUGCUGCUCCCUGAAG---CCACCGCCGCCACCUGG---------------CUCAUCGGUGGUUGCU---CCACUGAGCAUUCCGGUGAGCAGC ...........((((....))))..(((((((((.((((---((((((..(((....))---------------)....)))))))((((---(....)))))))).)).))))))) ( -43.30) >DroMoj_CAF1 219723 111 + 1 UCGCCGUUCCAGAGUCUCUGCUCGUGCUGCUCGCUGAAG---CCGCCGCCUAUGCCGCCGUCAUCCACGGCUUCGUCUUCGGUGAUGGCG---CCUCUCAGCGUCCCUGUGAGCAGC ...........((((....))))..(((((((((.....---.(((((...(((..(((((.....)))))..)))...)))))..((((---(......)))))...))))))))) ( -41.20) >DroAna_CAF1 169569 99 + 1 UCGCCGUUCCAGAGCCUGUGCUCCUGCUGUUCUCUGAAACCGCCUCCCCCGCCGCCCAC---------------CUCCUCGGUGGUGGCG---CCACUCAGUGUCCCCGUCAGCAGC ...........((((....))))((((((..(.((((...((((....((((((.....---------------.....)))))).))))---....)))).).......)))))). ( -30.00) >consensus UCGCCAUUCCAGAGCCUGUGCUCGUGCUGCUCCCUGAAG___CCGCCGCCGCCGCCGGC_______________CUCAUCGGUGGUGGCU___CCACUGAGCAUCCCGGUCAGCAGC ...........((((....))))..((((((................(((((((((((....................)))))))))))...........((......)).)))))) (-22.30 = -23.00 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:23 2006