Locus 139

Sequence ID 2L_DroMel_CAF1
Location 429,217 – 429,307
Length 90
Max. P 0.863629
window217

overview

Window 7

Location 429,217 – 429,307
Length 90
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 87.89
Mean single sequence MFE -17.00
Consensus MFE -12.51
Energy contribution -12.55
Covariance contribution 0.04
Combinations/Pair 1.06
Mean z-score -2.19
Structure conservation index 0.74
SVM decision value 0.84
SVM RNA-class probability 0.863629
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 429217 90 + 22407834
ACACCACAUCCACA------UCAGUGGG--UUGGUACCCGCGUCAUAUGCCAACUUAUUCAAUAAAUUCCUGGCCUCCUCGCCAUAUCAUCAUCGCCA
..((((.((((((.------...)))))--)))))....(((......((((..................)))).....)))................ ( -18.27)
>DroSec_CAF1 6723 96 + 1
ACACCACAUCCACAUCAACAUCAGUGGG--UUGGUACCCGCGUCAUAUGCCAACUUAUUCAAUAAAUUCCUGGCCUCCUCGCCAUAUCAUCAUCGCCA
..((((.((((((..........)))))--)))))....(((......((((..................)))).....)))................ ( -17.37)
>DroSim_CAF1 5709 96 + 1
ACACCACAUCCACAUCAACAUCAGUGGG--UUGGUACCCGCGUCAUAUGCCAACUUAUUCAAUAAAUUCCUGGCCUCCUCGCCAUAUCAUCAUCGCCA
..((((.((((((..........)))))--)))))....(((......((((..................)))).....)))................ ( -17.37)
>DroEre_CAF1 6470 83 + 1
ACA------------ACACAUCAGUGGG--CUGGUACCCGCGUCAUAUGCCAACUUAUUCAAUAAAUUCCUGGCC-UCUCGCCAUAUCAUCAUCGCCA
...------------.(((....)))((--((((((...........)))))..................((((.-....))))..........))). ( -14.40)
>DroYak_CAF1 6074 97 + 1
ACACCACA-CCACAUACACACCAGCGGGUACUGGUACCCGCGUCAUAUGCCAACUUAUUCAAUAAAUUCCGGGCCCCCUCGCCAUAUCAUCAUCGCCA
........-..............(((((((....)))))))..............................(((......)))............... ( -17.60)
>consensus
ACACCACAUCCACAUAAACAUCAGUGGG__UUGGUACCCGCGUCAUAUGCCAACUUAUUCAAUAAAUUCCUGGCCUCCUCGCCAUAUCAUCAUCGCCA
.......................((((....(((((...(((......((((..................)))).....)))..)))))...)))).. (-12.51 = -12.55 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:11 2006