| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 3,685,761 – 3,685,865 |
| Length | 104 |
| Max. P | 0.597645 |
| Location | 3,685,761 – 3,685,865 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 82.32 |
| Mean single sequence MFE | -19.26 |
| Consensus MFE | -11.43 |
| Energy contribution | -11.93 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.19 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.597645 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3685761 104 - 22407834 UACCGAAGAAUUAGACAAACAAACAAUAAAAUUGAUGGCAAGUGUCGCGUUUUGUCAUCAAGCUG------------CGACAAAAACAACUGCCAGAAAAAA-AAUAAAGGAGAAGU--- ..((...................((((...)))).(((((..(((((((.((((....)))).))------------)))))........))))).......-......))......--- ( -19.10) >DroPse_CAF1 173363 111 - 1 UACAAAGGAAUUAGACAAACAAACAAUAAAAUUUAUGGCAAGUGUCGCAUUUUGUCGUCAAACAGCGAC------AGCGACAAAAACAACUGCCAGGAAAA---AUAAAGAAACGACGGA ...............................(((.(((((..((((((....((((((......)))))------)))))))........))))).)))..---................ ( -21.00) >DroEre_CAF1 153272 104 - 1 UACAGAGGAAUUAGACAAACAAACAAUAAAAUUGAUGGCAAGUGUCGCAUUUUGCCAUCAAGCUG------------CGACAAAAACAACUGCCAGCAAAAA-AAUAAAGCAAAAGU--- ...............................(((((((((((........)))))))))))((((------------.(.((........))))))).....-..............--- ( -20.60) >DroYak_CAF1 158632 105 - 1 UACAGAGGAAUUAGACAAACAAACAAUAAAAUUGAUGGCAAGUGUCGCAUUUUGUCAUCAAGCUG------------CGACAAAAACAACUGGCAGGAAAAAAAGUAAAGGAAAAGU--- (((............................(((((((((((........))))))))))).(((------------(..............))))........)))..........--- ( -17.24) >DroAna_CAF1 164209 96 - 1 UACAAAGGAAUUAGACAAACAAACAAUAAAAUUUAUGGCAAGUGUCGCAUUUUGUCAUCAAGCAG------------CGACAAAAACAACUGCCAGGAAAAA-AAUGUC----------- ...............................(((.(((((..((((((..((((....))))..)------------)))))........))))).)))...-......----------- ( -15.90) >DroPer_CAF1 173375 117 - 1 UACAAAGGAAUUAGACAAACAAACAAUAAAAUUUAUGGCAAGUGUCGCAUUUUGUCGUCAAACAGCGACAGCGACAGCGACAAAAACAACUGCCAGGAAAA---AUAAAGAAACGACGGA ...............................(((.(((((..((((((...(((((((......))))))).....))))))........))))).)))..---................ ( -21.70) >consensus UACAAAGGAAUUAGACAAACAAACAAUAAAAUUGAUGGCAAGUGUCGCAUUUUGUCAUCAAGCAG____________CGACAAAAACAACUGCCAGGAAAAA_AAUAAAGAAAAAGU___ ...............................(((.(((((..(((....(((((((......................))))))))))..))))).)))..................... (-11.43 = -11.93 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:18 2006