Locus 1385

Sequence ID 2L_DroMel_CAF1
Location 3,685,173 – 3,685,274
Length 101
Max. P 0.791969
window2262

overview

Window 2

Location 3,685,173 – 3,685,274
Length 101
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 93.98
Mean single sequence MFE -22.58
Consensus MFE -17.23
Energy contribution -17.11
Covariance contribution -0.12
Combinations/Pair 1.11
Mean z-score -2.12
Structure conservation index 0.76
SVM decision value 0.59
SVM RNA-class probability 0.791969
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3685173 101 - 22407834
AACGAGUUUUUCGCCCAGUGCAUUUAUGCUACAGACUCCUGUGGCGCUUAUCUCUUUAUUCUCGACUUUCUGUCUUUUUC-CCGUUGGAUUUUCCCGACUCA
...(((......((.....))......(((((((....)))))))...............)))(((.....)))......-..(((((......)))))... ( -22.00)
>DroSec_CAF1 147559 101 - 1
AACGAGUUUUUCGUCCAGUGUAUUUAUGCCAUAGACUCCUGUGGCGCUUAUCUCUUUAUUCUCGACUUUCUGUCUUUUUC-CCGUUGGAUUUUCCCGACUCA
...(((((....((((((((.......(((((((....)))))))..................(((.....)))......-.))))))))......))))). ( -24.70)
>DroSim_CAF1 156633 101 - 1
AAAGAGUUUUUUGCCCAGUGUACUUAUGCCAUCGACUCCUGUGGCGCUUAUCUCUUUAUUCUCGACUUUCUGUCUUUUUC-CCGUUGGGUUUUCCCGACUCA
((((((.....(((((((.((.............))..))).)))).....))))))......(((.....)))......-..((((((....))))))... ( -23.62)
>DroEre_CAF1 152545 101 - 1
AACGAGUU-UUCGCCCAGUGUAGGUAUGCCAUCGACUCCUGUGGCGCUUAUCUCUUUAUUCUCGACUUUCUGUCUUUUUCCCCGUUGGAUUUUCCCGACUCA
...(((..-..(((((((.((.((....))....))..))).)))).....))).........(((.....))).........(((((......)))))... ( -22.40)
>DroYak_CAF1 158011 100 - 1
AACGAGUU-UUCGCGCAGUGUAUGUAUGCCAUCGACUCCUGUGGCGCUUAUCUCUUUAUUCUCGACUUUCUGUCUUUUUC-CCGUUGGAUUUUCCCGACUCA
...(((..-...(((((.....)))..(((((.(....).)))))))....))).........(((.....)))......-..(((((......)))))... ( -20.20)
>consensus
AACGAGUUUUUCGCCCAGUGUAUUUAUGCCAUCGACUCCUGUGGCGCUUAUCUCUUUAUUCUCGACUUUCUGUCUUUUUC_CCGUUGGAUUUUCCCGACUCA
...(((.....(((((((....................))).)))).....))).........(((.....))).........(((((......)))))... (-17.23 = -17.11 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:16 2006