| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 3,682,712 – 3,682,803 |
| Length | 91 |
| Max. P | 0.936145 |
| Location | 3,682,712 – 3,682,803 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 83.92 |
| Mean single sequence MFE | -21.88 |
| Consensus MFE | -20.09 |
| Energy contribution | -19.95 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.92 |
| SVM decision value | 1.25 |
| SVM RNA-class probability | 0.936145 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3682712 91 + 22407834 AGAA----------A-AAGU-UU--AUACAGCCAUAUUUUAUUGGUAAUGUGCUUAUGGCAUAAAUAUUGUAUUAAGUAACUGGUGGGCGUCACCACCAAAAAAC----------- ....----------.-.(((-(.--(((((((((........))))..(((((.....))))).....))))).....))))(((((......))))).......----------- ( -22.50) >DroVir_CAF1 194352 103 + 1 GGAA----------AAAAGU-UU--ACCCAGCCAUAUUUUAUUGGUAAUGUGCUUAUGGCAUAAAUAUUGUAUUAAGUAACUGGUGGGCGUCACCACCAAAAAAGAACGAAAAAAA ....----------....((-((--.....((((........))))....((((((..(((.......)))..))))))..((((((......)))))).....))))........ ( -21.80) >DroGri_CAF1 178151 96 + 1 CGAA-----------AAAGU-UU--ACCCAACCAUAUUUUAUUGGUAAUGUGCUUAUGGCAUAAAUAUUGUAUUAAGUAACUGGUGGGCGUCACCACCAACCAAAA------AAAA ....-----------.....-..--...........((((.(((((....((((((..(((.......)))..))))))..((((((......))))))))))).)------))). ( -22.10) >DroWil_CAF1 221286 107 + 1 GGAAAACAUAACCGAAACUU-UU--GCCCAGCCAUAUUUUAUUGGUAAUGUGCUUAUGGCAUAAAUAUUGUAUUAAGUAACUGGUGGGCGUCACCACCAACCAACA------AAGA ((..............((((-.(--((...((((........))))..(((((.....)))))......)))..))))...((((((......)))))).))....------.... ( -23.70) >DroMoj_CAF1 205656 94 + 1 GGCA-----------AAAGU-UU--ACCCAGCCAUAUUUUAUUGGUAAUGUGCUUAUGGCAUAAAUAUUGUAUUAAGUAACUGGUGGGCGUCACCACCAAAAAA--------AAUA .(((-----------(....-..--.....((((........))))..(((((.....)))))....))))..........((((((......)))))).....--------.... ( -21.10) >DroAna_CAF1 161293 94 + 1 AGAA----------AAAAAGUUCCAGCCCAGCCAUAUUUUAUUGGUAAUGUGCUUAUGGCAUAAAUAUUGUAUUAAGUAACUGGUGGGCGUCACCACCAAA-AAC----------- ....----------....((((.(......((((........))))..(((((.....))))).............).))))(((((......)))))...-...----------- ( -20.10) >consensus GGAA__________AAAAGU_UU__ACCCAGCCAUAUUUUAUUGGUAAUGUGCUUAUGGCAUAAAUAUUGUAUUAAGUAACUGGUGGGCGUCACCACCAAAAAAC_______AA_A ..............................((((........))))....((((((..(((.......)))..))))))..((((((......))))))................. (-20.09 = -19.95 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:10 2006