Locus 1380

Sequence ID 2L_DroMel_CAF1
Location 3,677,546 – 3,677,646
Length 100
Max. P 0.771137
window2255

overview

Window 5

Location 3,677,546 – 3,677,646
Length 100
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 97.33
Mean single sequence MFE -24.58
Consensus MFE -20.82
Energy contribution -21.23
Covariance contribution 0.42
Combinations/Pair 1.03
Mean z-score -1.90
Structure conservation index 0.85
SVM decision value 0.53
SVM RNA-class probability 0.771137
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3677546 100 - 22407834
UUGCUGAAAGCCAGCUGUUGCCAAAAAUUGCAGGCUAAUUGAAUUUUCUAGCAGCAGCGCCAUUUUGUAUGCUACGAAAUAUUUUAUAACUGCCUUUUGA
.....(((((.((((((((((..((((((.(((.....)))))))))...))))))))...((((((((...))))))))..........)).))))).. ( -22.90)
>DroVir_CAF1 184317 99 - 1
UUGCUGAAAGGCAGCUGUUGCCAA-AAUUGCAGGCUAAUUGAAUUUUCUAGCAGCAGCGCCAUUUUGUAUGCUACAAAAUAUUUUAUAACUGCCUUUUGA
.....((((((((((((((((.((-((((.(((.....)))))))))...))))))))...((((((((...))))))))..........)))))))).. ( -29.90)
>DroGri_CAF1 171476 99 - 1
UUGCUGAAAGGCAGCUGUUGCCAA-AAUUGCAGGCUAAUUGAAUUUUCUAGCAGCAGCGCCAUUUUGUAUGCUACAAAAUAUUUUAUAACUGCCUUUUGA
.....((((((((((((((((.((-((((.(((.....)))))))))...))))))))...((((((((...))))))))..........)))))))).. ( -29.90)
>DroSim_CAF1 146342 100 - 1
UUGCGGAAAGCCAGCUGUUGCCAAAAAUUGCAGGCUAAUUGAUUUUUCUAGCAGCACCGCCAUUUUGUAUGCUACAAAAUAUUUUAUAACUGCCUUUUGA
..((((...((..(((((((((..........))).....((....)).))))))...)).((((((((...)))))))).........))))....... ( -19.00)
>DroEre_CAF1 144912 100 - 1
UUGCUGAAAGCCAGCUGUUGCCAAAAAUUGCAGGCUAAUUGAAUUUUCUAGCAGCAGCGCCAUUUUGUAUGCUACGAAAUAUUUUAUAACUGCCUUUUGA
.....(((((.((((((((((..((((((.(((.....)))))))))...))))))))...((((((((...))))))))..........)).))))).. ( -22.90)
>DroYak_CAF1 150131 100 - 1
UUGCUGAAAGCCAGCUGUUGCCAAAAAUUGCAGGCUAAUUGAAUUUUCUAGCAGCAGCGCCAUUUUGUAUGCUACGAAAUAUUUUAUAACUGCCUUUUGA
.....(((((.((((((((((..((((((.(((.....)))))))))...))))))))...((((((((...))))))))..........)).))))).. ( -22.90)
>consensus
UUGCUGAAAGCCAGCUGUUGCCAAAAAUUGCAGGCUAAUUGAAUUUUCUAGCAGCAGCGCCAUUUUGUAUGCUACAAAAUAUUUUAUAACUGCCUUUUGA
.....(((((.((((((((((..((((((.(((.....)))))))))...))))))))...((((((((...))))))))..........)).))))).. (-20.82 = -21.23 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:09 2006