Locus 138

Sequence ID 2L_DroMel_CAF1
Location 427,902 – 427,996
Length 94
Max. P 0.734868
window216

overview

Window 6

Location 427,902 – 427,996
Length 94
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 82.21
Mean single sequence MFE -25.62
Consensus MFE -13.89
Energy contribution -14.93
Covariance contribution 1.04
Combinations/Pair 1.04
Mean z-score -2.27
Structure conservation index 0.54
SVM decision value 0.43
SVM RNA-class probability 0.734868
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 427902 94 - 22407834
GUCGCAGAU--------GUAUCUUAAAGAUACAAAUUCUGUACGCUGG---GCGCAACGUGAUUGCAAUCUUUAGCAUCGUCAUCAUCAUC-------AGCAGCAGCAACAA
((.((((((--------(((((.....))))))...)))))))((((.---((.....((((((((........))).....)))))....-------.))..))))..... ( -24.70)
>DroSec_CAF1 5392 94 - 1
GUGGCAGAU--------GUAUCUUAAAGAUACAAAUUCUGUACGCUGC---ACGCAACGUGAUUGCAAUCUUUAGCAUCGUCAUCAUCAUC-------AGCAGCAGCAACAA
(((.(((((--------(((((.....))))))...)))))))(((((---..((...((((((((........)))........))))).-------.)).)))))..... ( -25.10)
>DroSim_CAF1 4382 94 - 1
GUCGCAGAU--------GUAUCUUAAAGAUACAAAUUCUGUACGCUGC---GCGCAACGUGAUUGCAAUCUUUAGCAUCGUCAUCAUCAUC-------AGCAGCAGCAACAA
((.((((((--------(((((.....))))))...)))))))(((((---((.....((((((((........))).....)))))....-------.)).)))))..... ( -27.50)
>DroEre_CAF1 5040 87 - 1
GGCGCAGAU--------GUAUCUUGGAGAUACAAAUUCUGUACGCUGC---GCGCAACGUGAUUGCAAUCUUUAGCAUCGUCAUCAUCAACAACAACA--------------
.((((((.(--------((((...(((........))).)))))))))---)).....((((((((........)))..)))))..............-------------- ( -20.50)
>DroAna_CAF1 5336 105 - 1
GCAGCAGAUGUAUGUAUGUAUCUUUCAGAUACAAAUUCUGUACGCUGAGGAGCGCAACGUGAUUGCAAUCUUUAGCAUCGUCAUCAUCAUC-------AUCAGCAGCACCAC
((.((.((((.(((..((((((.....))))))..........((((((((..((((.....))))..))))))))...........))))-------))).)).))..... ( -30.30)
>consensus
GUCGCAGAU________GUAUCUUAAAGAUACAAAUUCUGUACGCUGC___GCGCAACGUGAUUGCAAUCUUUAGCAUCGUCAUCAUCAUC_______AGCAGCAGCAACAA
...(((((.........(((((.....)))))....)))))..(((((..........((((((((........))).....)))))............)))))........ (-13.89 = -14.93 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:11 2006