Locus 1378

Sequence ID 2L_DroMel_CAF1
Location 3,674,019 – 3,674,111
Length 92
Max. P 0.660846
window2253

overview

Window 3

Location 3,674,019 – 3,674,111
Length 92
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 73.02
Mean single sequence MFE -35.57
Consensus MFE -11.23
Energy contribution -11.45
Covariance contribution 0.22
Combinations/Pair 1.33
Mean z-score -2.16
Structure conservation index 0.32
SVM decision value 0.27
SVM RNA-class probability 0.660846
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3674019 92 - 22407834
UGGGA--CUGGGAGUAGGGAAUCAUUCUGGAUGA------CGAGCG----GU--GGGCAGUAGGAAAUCGAAUUGCCCCGCUGUGGGUUUUCUUUGCACCCAAUUC
..(((--.((((.((((((((((......)))((------(..(((----((--(((((((..(....)..)))).))))))))..))).))))))).)))).))) ( -31.90)
>DroPse_CAF1 160205 104 - 1
CUCCAUUCUGAGAGGAG-CAGUCACAGGGGGAGC-GGGGAGGAGAGCCCCGCCCUAGCAAUAGGAAAUCAAAUUGCUCCUCUGUGGCUUUUCUUUACACGAAACUC
.....(((((.((((((-.((((((((((((.((-((((.......))))))((((....))))............)))))))))))).)))))).)).))).... ( -44.50)
>DroSec_CAF1 136403 91 - 1
UGUGA--CUGGGAGUAGGGAAUCAUUCUGGGUGA------CGAGCG-----U--GGGCAGUGGGAAAUCGAAUUGCCCCGCUGUGGGUUUUCUUUGCACCCAAUUC
.....--.((((.((((((((..((((..(....------).((((-----.--(((((((..(....)..)))))))))))..)))).)))))))).)))).... ( -34.90)
>DroEre_CAF1 141211 98 - 1
UGGGA--CAGGGAGCAUGGAAUCAUUCUGGGUGACGGCGACGAGUG----GU--GGGCAAUAGGAAAUCCAAUUGAACCGCUGUGGGUUUUCUUUGCACCCAAUUC
.....--..(((.(((.((((........(....)..(.((.((((----((--...((((.((....)).)))).)))))))).)...)))).))).)))..... ( -30.60)
>DroYak_CAF1 146402 92 - 1
UGGAA--CUGGGAGUGCGGAAUCAUUCUGGGUGA------CGAGUG----GU--GGGCAAUAGGAAAUCCAAUUGCCCCGCUGUGGGUUUUCUUUGCACGCAAUUC
.(..(--((.((((((......)))))).)))..------)((((.----((--(.((((.((((((((((...((...))..)))))))))))))).))).)))) ( -33.10)
>DroPer_CAF1 160191 104 - 1
CUCCAUUCUGAGAGGAG-CAGUCACAGGGGGAGC-GGAGAGGAGAGCCCCGCCCUAGCAAUAGGAAAUCAAAUUGCUCCUCUGUGGCUUUUCUUUACACGAAACUC
.....(((((.((((((-.(((((((((((.(((-((...((......))..((((....))))........)))))))))))))))).)))))).)).))).... ( -38.40)
>consensus
UGGGA__CUGGGAGUAGGGAAUCAUUCUGGGUGA______CGAGAG____GU__GGGCAAUAGGAAAUCAAAUUGCCCCGCUGUGGGUUUUCUUUGCACCCAAUUC
.............((((((((((((.................((((........(((((((..(....)..)))))))))))))))...))))))))......... (-11.23 = -11.45 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:04 2006