Locus 1375

Sequence ID 2L_DroMel_CAF1
Location 3,665,184 – 3,665,295
Length 111
Max. P 0.851057
window2247

overview

Window 7

Location 3,665,184 – 3,665,295
Length 111
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 84.96
Mean single sequence MFE -21.02
Consensus MFE -17.57
Energy contribution -17.90
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.18
Structure conservation index 0.84
SVM decision value 0.79
SVM RNA-class probability 0.851057
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3665184 111 + 22407834
UGAUUCUAGGCGCGAGCCAAUUGACACAAUCAAAUUCGAACCUCGCAAAUUCGCUUAAUGCGCCGCGAGACAAAAACAAGAGCAGCAAAA--------AAAUAUGCAAAAAAAAAAAGG
((.((((.(((....)))..((((.....))))........(((((.....(((.....)))..))))).........))))))(((...--------.....)))............. ( -22.20)
>DroPse_CAF1 152331 95 + 1
UGAUUCUAGGCGCGAGCCAAUUGACACAAUCAAAUUCGAACCUCGCAAAUUCGCUUAAUGCGCCGCGAGACAAAAACAAAACCAGCAAA---------AAA------A-----AA----
...(((..(((....)))..((((.....))))....))).(((((.....(((.....)))..)))))....................---------...------.-----..---- ( -18.90)
>DroEre_CAF1 130133 104 + 1
UGAUUCUAGGCGCGAGCCAAUUGACACAAUCAAAUUCGAACCUCGCAAAUUCGCUUAAUGCGCCGCGAGACAA-AACAAAAGCAGCAAA---------AAAUAUGCAA-----AAAAGG
...(((..(((....)))..((((.....))))....))).(((((.....(((.....)))..)))))....-.......(((.....---------.....)))..-----...... ( -20.90)
>DroYak_CAF1 137118 114 + 1
UGAUUCUAGGCGCGAGCCAAUUGACACAAUCAAAUUCGAACCUCGCAAAUUCGCUUAAUGCGCCGCGAGACAAAAACAAAAGCAGCAAAAAUGUGGAAAAAUAUGGAA-----AAAAGG
...((((((((....)))..((..((((.((......))..(((((.....(((.....)))..)))))......................))))..))....)))))-----...... ( -24.80)
>DroAna_CAF1 140991 91 + 1
UGACUCUAGGCGCGAGCCAAUUGACACAAUCAAAUUCGAACCUCGCAAAUCCGCUUAAUGCGCCCCGAGACAAAAA-AAAAGUCUCAAA---------A-----------------AG-
........((((((((....((((...........))))..)))))......((.....)))))..(((((.....-....)))))...---------.-----------------..- ( -20.40)
>DroPer_CAF1 152159 94 + 1
UGAUUCUAGGCGCGAGCCAAUUGACACAAUCAAAUUCGAACCUCGCAAAUUCGCUUAAUGCGCCGCGAGACAAAAACAAAACCAGCAAA---------AA-------A-----AA----
...(((..(((....)))..((((.....))))....))).(((((.....(((.....)))..)))))....................---------..-------.-----..---- ( -18.90)
>consensus
UGAUUCUAGGCGCGAGCCAAUUGACACAAUCAAAUUCGAACCUCGCAAAUUCGCUUAAUGCGCCGCGAGACAAAAACAAAAGCAGCAAA_________AAA______A_____AA_AG_
...(((..(((....)))..((((.....))))....))).(((((.....(((.....)))..))))).................................................. (-17.57 = -17.90 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:59 2006