Locus 1372

Sequence ID 2L_DroMel_CAF1
Location 3,648,535 – 3,648,648
Length 113
Max. P 0.764135
window2244

overview

Window 4

Location 3,648,535 – 3,648,648
Length 113
Sequences 5
Columns 115
Reading direction reverse
Mean pairwise identity 86.54
Mean single sequence MFE -31.12
Consensus MFE -20.06
Energy contribution -19.74
Covariance contribution -0.32
Combinations/Pair 1.28
Mean z-score -2.55
Structure conservation index 0.64
SVM decision value 0.51
SVM RNA-class probability 0.764135
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3648535 113 - 22407834
GAAAAGUGGUUUCGGCGCACAGCUGUUUUGAAGGAACGAAAUGGAAGUAGAACGUUCAAAACGGAGACCUUAAGAGAAA--AAUGCUCUUAAGAUCGACAAAAGUCUCUUAGCUU
.....(((((....)).)))((((((((((((.(.((.........))....).))))))))((((((((((((((...--....))))))))..........)))))).)))). ( -26.90)
>DroSec_CAF1 116159 113 - 1
GAAAAGUGGUUUCGGCGCACAGCUGUUUUGAAGGAACGGAAUGGAAGUAGAACAUUCCAAUCGGAGACUUUAAGAGAAA--AAUGCUCUUAAGAUUGCCGAAAUUCUCUUAGCUU
...(((.(((((((((........((((.....))))((((((.........))))))(((((....).(((((((...--....))))))))))))))))))))..)))..... ( -31.30)
>DroSim_CAF1 121885 113 - 1
GAAAAGUGGUUUCGACGCACAGCUGUUUUGAAGGAACGGAAUGGAAGUAGAACAUUCCAAUCGGAGACUUUAAGAGAAA--AAUGCUCUUAGGAUUGACGAAAUUCUCUUAGCUU
.....(((((....)).)))(((((....(((.....((((((.........))))))..(((..((..(((((((...--....)))))))..))..)))..)))...))))). ( -27.70)
>DroEre_CAF1 118449 115 - 1
AAAAAGAGGUUUCGGCGCUCAGCUGUUUUAAAGAAACGGAAUGGAAGUAGAACAUUCCGUUUGGAAACUUUAAGAGCAAGUCAUUCUCUUAAGAUUGCCGAAAAACUCUUAGCUU
...(((((.((((((((.((....(((((....((((((((((.........)))))))))).))))).(((((((.((....))))))))))).))))))))..)))))..... ( -38.50)
>DroYak_CAF1 121592 115 - 1
AAAAAGAGGUUUUGGCGCUCAGCUGUUUUGAAGAAACAGAAUGGAAGUAGAACAUUCCGAUUGGAAACUUUAAGAGAAACGAAUUCUCUUAAGAUCAGCGAAAAACUCUUAGCUC
...(((((.((((.((......(((((((...)))))))...((((........))))(((((....).(((((((((.....))))))))))))).)).)))).)))))..... ( -31.20)
>consensus
GAAAAGUGGUUUCGGCGCACAGCUGUUUUGAAGGAACGGAAUGGAAGUAGAACAUUCCAAUCGGAGACUUUAAGAGAAA__AAUGCUCUUAAGAUUGACGAAAAUCUCUUAGCUU
.....(((((....)).)))(((((............((((((.........))))))..(((..((.((((((((.........)))))))).))..)))........))))). (-20.06 = -19.74 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:56 2006