Locus 1368

Sequence ID 2L_DroMel_CAF1
Location 3,632,564 – 3,632,670
Length 106
Max. P 0.506146
window2236

overview

Window 6

Location 3,632,564 – 3,632,670
Length 106
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 85.32
Mean single sequence MFE -25.90
Consensus MFE -21.22
Energy contribution -21.62
Covariance contribution 0.40
Combinations/Pair 1.14
Mean z-score -1.45
Structure conservation index 0.82
SVM decision value -0.05
SVM RNA-class probability 0.506146
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3632564 106 + 22407834
GACACAUUGACCCAUUCAAUUUUUUUCUCGCAGUGUAGCUUUAGAGUACCAAACCGGCGAACUGGUUUGGUCCUAAGUGACAGGCCAAUUCGCUACGCGAAACAAA
.....(((((.....))))).......((((..(((.((((.((.(.((((((((((....))))))))))))))))).)))(((......)))..))))...... ( -28.70)
>DroSec_CAF1 100287 106 + 1
GACACAUUGAACCAUUCAAUUUUUUUCUCGCAGUGUAGAUUUAGAGUGCCAAACCGGCGAACUGGUUUGGUCAUAAGUGACAGGCCAAUUCGCUACGCGAAACAAA
.....(((((.....))))).......((((..(((..(((((....((((((((((....))))))))))..))))).)))(((......)))..))))...... ( -26.20)
>DroSim_CAF1 105629 105 + 1
GACACAUUGAACCAUUCAAUUU-UUUCUCGCAGUGUAUCUUUACAGUGCCAAACCGGCGAACUGGUUUGGUCCUAAGUGACAGGCCAAUUCGCUACGCGAAACAAA
.....(((((.....)))))..-((((.((((.((((....)))).)))......((((((.(((((((.((......))))))))).))))))..).)))).... ( -28.30)
>DroEre_CAF1 102026 95 + 1
A---------ACAAUUCCAUUU--UUUUCCCAGUGCAGCUAUAGAGUGUCAAACCGACGAACUGGUUUGGUCCUAAGUGACAGGCCAAUUCGCUACGCGAAACAAA
.---------............--........(((.(((........(((.....)))(((.(((((((.((......))))))))).)))))).)))........ ( -20.20)
>DroYak_CAF1 105198 97 + 1
A--------AACUACUCCACUU-UUUCUCCCAGUGCAGUUAUAGAGCGCCAAACCGGCGAACUGGUUUGGUCCUAAGUGACAAGCCAAUUCGCUACGCGAAACAAA
.--------........((((.-........))))..(((((..((.((((((((((....)))))))))).))..))))).......(((((...)))))..... ( -26.10)
>consensus
GACACAUUGAACCAUUCAAUUU_UUUCUCGCAGUGUAGCUUUAGAGUGCCAAACCGGCGAACUGGUUUGGUCCUAAGUGACAGGCCAAUUCGCUACGCGAAACAAA
................................(((((((........(((.....)))(((.(((((((.((......))))))))).))))))))))........ (-21.22 = -21.62 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:48 2006