Locus 1365

Sequence ID 2L_DroMel_CAF1
Location 3,620,470 – 3,620,569
Length 99
Max. P 0.778354
window2232

overview

Window 2

Location 3,620,470 – 3,620,569
Length 99
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 77.52
Mean single sequence MFE -26.48
Consensus MFE -14.51
Energy contribution -14.98
Covariance contribution 0.48
Combinations/Pair 1.24
Mean z-score -1.90
Structure conservation index 0.55
SVM decision value 0.55
SVM RNA-class probability 0.778354
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3620470 99 - 22407834
ACCGAUUCAGUGGUUCCAAGUAAGCCGCCAUGGGACCAAAACAACUUUACUUUUGGGUGACCUAAAGU--AGAAGCGAUCUUAAGUAAGAAAAUGUAAAUA
..((.(((..((((((((.(........).)))))))).........((((((.((....)).)))))--)))).)).((((....))))........... ( -24.70)
>DroPse_CAF1 103464 94 - 1
ACCGAUUCUGUAGUGCCAAGAAGACCGCCAUGGGCCCAGAAUAACUCCACUUUGGGGUGACCUGAAAAAAGGACCCAAUUCAA-------UAAGGUAUGUG
(((.((((((..(.(((..(........)...))))))))))...(((..((..((....))..))....)))..........-------...)))..... ( -19.90)
>DroSim_CAF1 93585 99 - 1
ACCGAUUCGGUGGUUCCAAGUAAGCCGCCAUGGGACCAAAACAACUUUACUUUGGGGUGACCUAAAGU--AGAAGCAAUCUUAAGUUAGAAAAUGUAAAUA
((((...))))(((((((.(........).)))))))...(((..(((((((((((....))))))))--))).....(((......)))...)))..... ( -29.30)
>DroEre_CAF1 89908 97 - 1
ACCGCUUCCGUGGUUCCAAGUAAGCCGCCAUGGGACCAAAACAACUUUACUUUGGGGUGACCUAAGGC--GGAAGCGAUUCAAAGU-UC-AAAUGUAAAUA
..((((((((((((((((.(........).))))))))...........(((((((....))))))))--))))))).........-..-........... ( -35.80)
>DroYak_CAF1 92930 97 - 1
ACUGUUUCCGUGGUUCCCAGUAAGCCGCCAUGGGCCCAAAACAACUUUACUUUGGGGUGACCUAAAGU--GGAAGCGAUUUAAGUU-AC-AAAUGUAAAUA
..(((((((.(((..((((...........)))).)))..........((((((((....))))))))--))))))).......((-((-....))))... ( -29.30)
>DroPer_CAF1 103518 94 - 1
ACCGAUUCUGUAGUGCCAAGAAGACCGCCAUGGGCCCAGAAUAACUCCACUUUGGGGUGACCUGAAAAAAGGACCCAAUUCAA-------UAAGGUAUGUG
(((.((((((..(.(((..(........)...))))))))))...(((..((..((....))..))....)))..........-------...)))..... ( -19.90)
>consensus
ACCGAUUCCGUGGUUCCAAGUAAGCCGCCAUGGGACCAAAACAACUUUACUUUGGGGUGACCUAAAGU__GGAAGCAAUUCAAAGU_A__AAAUGUAAAUA
......((((((((............))))))))..........((...(((((((....)))))))...))............................. (-14.51 = -14.98 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:44 2006