| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 3,616,544 – 3,616,645 |
| Length | 101 |
| Max. P | 0.892358 |
| Location | 3,616,544 – 3,616,645 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 63.31 |
| Mean single sequence MFE | -23.20 |
| Consensus MFE | -10.70 |
| Energy contribution | -9.60 |
| Covariance contribution | -1.10 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.46 |
| SVM decision value | 0.97 |
| SVM RNA-class probability | 0.892358 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3616544 101 - 22407834 UUAAUUAAACAUUUAUAAUCUUACUAUUCCAUGAGCUACGC-AGUUACUGAACUCAGAGCUCUUUACUUCAAGAGAUUGAGUAGU---------------UUAGAUUGUAUCUG-UUU ......(((((..((((((((.(((((((...(((((..(.-((((....)))))..)))))....(((...)))...)))))))---------------..))))))))..))-))) ( -25.60) >DroSim_CAF1 89627 102 - 1 UAAAUUAAACAUCUAUAACUUUACAUUCCGAUGAGCUACGGAAGUUACUGAACUCACAGCUCUUUACUUCGAGAGAUUGAGUAGU---------------UUAGGUUGUAUCUG-UUU ......(((((..((((((......(((((........)))))....((((((((.((((((((......))))).))).).)))---------------))))))))))..))-))) ( -25.70) >DroYak_CAF1 88519 106 - 1 UAAAAU----G--------CUUAUGUACUAAUGAGCUAUGAAAGUUAAUGAACUACGAGCUCUUUACUUCUUGGGUAUAAGUAGUUUUAGUAGUAAGAAGACAGGUUGUAACAGAUAC ......----(--------(((((......))))))((..(..(((.....(((((((((((((((((.....)))).))).)))))..))))).....)))...)..))........ ( -18.30) >consensus UAAAUUAAACAU_UAUAA_CUUACAUUCCAAUGAGCUACGAAAGUUACUGAACUCAGAGCUCUUUACUUCAAGAGAUUGAGUAGU_______________UUAGGUUGUAUCUG_UUU .....................(((...((...(((((.....((((....))))...))))).((((((.........))))))...................))..)))........ (-10.70 = -9.60 + -1.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:40 2006