Locus 1359

Sequence ID 2L_DroMel_CAF1
Location 3,597,449 – 3,597,567
Length 118
Max. P 0.821332
window2222

overview

Window 2

Location 3,597,449 – 3,597,567
Length 118
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 96.35
Mean single sequence MFE -32.37
Consensus MFE -28.42
Energy contribution -28.78
Covariance contribution 0.36
Combinations/Pair 1.03
Mean z-score -1.57
Structure conservation index 0.88
SVM decision value 0.68
SVM RNA-class probability 0.821332
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3597449 118 + 22407834
UGCAGCUUUCGUGCUUCAGAUGGCCGGCGGCUAAAUUUGUCGCACGUUGAGUA--UUUUUAAACCAUGAGAAAAUCCUUUGGCGCUAAUAGCCCGAAUUCCUUGUGCUUAACAUAAAAAU
..........((((..(((((((((...))))..)))))..))))((((((((--((((((.....)))))).....(((((.((.....))))))).......))))))))........ ( -28.90)
>DroVir_CAF1 77404 118 + 1
UGCAGCUUUCGUGCUGCACAUGGCCGGCGGCCAAAUUUGUCGCACGUUGAGUA--UUUUUAAACCAUGAGAAAAUCCUUUGGCGCUAAUAGCCCGAAUUCCUUGUGCUUAACAUAAAAAU
((((((......))))))..(((((...)))))........(((((..((((.--((((((.....))))))......((((.((.....))))))))))..)))))............. ( -32.50)
>DroPse_CAF1 71935 118 + 1
UGCAGCUUUCGUGCUGCAUUUGGCCGGCGGCGAAAUUUGUCGCACGUUGAGUA--UUUUUAAACCAUGAGAAAAUCCUUUGGCGCUAAUAGCCCGAAUUCCUUGUGCUUAACAUAAAAAU
((((((......))))))........(((((((...)))))))..((((((((--((((((.....)))))).....(((((.((.....))))))).......))))))))........ ( -33.00)
>DroGri_CAF1 79032 120 + 1
UGCAACUUUCGUGCUGCACAUGGCCGGCGGCCAAAUUUGUCGCACGUUGGGUAUAUUUUUAAACCAUGAGAAAAUCCUUUGGCGCUAAUAGCCCGAAUUCCUUGUGCUUAACAUAAAAAU
..........((((.(((..(((((...)))))....))).))))((((((((((((((((.....)))))).....(((((.((.....))))))).....))))))))))........ ( -32.00)
>DroWil_CAF1 96391 118 + 1
UGCAGCUUUCGUGCUGCAUAUGGCCUGCGGCCAAAUUUGUCGCACGUUGAGUA--UUUUUAAACCAUGAGAAAAUCCUUUGGCGCUAAUAGCCCGAAUUCCUUGGGCUUAACAUAAAAAU
.((.((((.(((((.(((..(((((...)))))....))).)))))..)))).--........(((.(((......)))))).))....(((((((.....)))))))............ ( -34.80)
>DroPer_CAF1 72215 118 + 1
UGCAGCUUUCGUGCUGCAUUUGGCCGGCGGCGAAAUUUGUCGCACGUUGAGUA--UUUUUAAACCAUGAGAAAAUCCUUUGGCGCUAAUAGCCCGAAUUCCUUGUGCUUAACAUAAAAAU
((((((......))))))........(((((((...)))))))..((((((((--((((((.....)))))).....(((((.((.....))))))).......))))))))........ ( -33.00)
>consensus
UGCAGCUUUCGUGCUGCAUAUGGCCGGCGGCCAAAUUUGUCGCACGUUGAGUA__UUUUUAAACCAUGAGAAAAUCCUUUGGCGCUAAUAGCCCGAAUUCCUUGUGCUUAACAUAAAAAU
((((((......))))))........(((((.......)))))..((((((((..((((((.....)))))).....(((((.((.....))))))).......))))))))........ (-28.42 = -28.78 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:35 2006