| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 3,597,219 – 3,597,317 |
| Length | 98 |
| Max. P | 0.653662 |
| Location | 3,597,219 – 3,597,317 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 77.32 |
| Mean single sequence MFE | -31.66 |
| Consensus MFE | -24.68 |
| Energy contribution | -24.76 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.653662 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3597219 98 - 22407834 GAGUUA---GGCUGCAAACUAAAUAACAACUGAUUUUCUUUCGGUGCAUCCCCAGUGAAGUGGAGGCGUUCCUUGGGGGGAGGUUUCAGGGGCUGGGGGAG ...(((---(........))))......(((((.......)))))...((((((((......(((((.((((.....)))).)))))....)))))))).. ( -30.30) >DroSec_CAF1 64780 98 - 1 UAUUUA---GGCUGCAAACUGAUUAAUAACAGAUUUUCUUUCAGUGCCUCCCCAGUGAAGUGGAGGCGUUCCUUGGGGGGAGGUUUCAGGGGCUGGGGGAG ((.(((---(........)))).))...........(((..((((((((((.(......).))))))...(((((..(.....)..)))))))))..))). ( -32.30) >DroSim_CAF1 69792 98 - 1 UAGUUA---GGCUGCAAACUAAAUAAUAAGUGAUUUUCUUUCAGUGCCUUCCCAGUGAAGUGGAGGCGUUCCUUGGGGGGAGGUUUCAGGGGCUGGGGGAG (((((.---.......)))))...............(((..((((((((((.(......).))))))...(((((..(.....)..)))))))))..))). ( -29.50) >DroEre_CAF1 66641 100 - 1 AUGGCAAGUGUCUGCAAUCCGAGCAAGGACGCAAUUUCUUGCAGUGCACCU-CAGUGCAGUGGAGGCGUUCCUUGGGGGGAGGUUUCAGGGGCUGGGGGAG ...(((((....(((..(((......))).)))....)))))......(((-((((.(....(((((.((((.....)))).)))))..).)))))))... ( -37.70) >DroYak_CAF1 68413 86 - 1 AUGGUAACUGUUUGCUUU---------------AUUUCUUUCAGUGCCCCUUUGGCGGAGUGGAGGCGUUCCUUGGGGGGAGGUUUCAGGGGCUGGGGGAG ..(((((....)))))..---------------...(((..((((.((((......))....(((((.((((.....)))).))))).)).))))..))). ( -28.50) >consensus AAGUUA___GGCUGCAAACUAAAUAAUAACUGAUUUUCUUUCAGUGCCUCCCCAGUGAAGUGGAGGCGUUCCUUGGGGGGAGGUUUCAGGGGCUGGGGGAG ....................................(((..((((((((((.(......).))))))...(((((..(.....)..)))))))))..))). (-24.68 = -24.76 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:34 2006