Locus 1350

Sequence ID 2L_DroMel_CAF1
Location 3,582,028 – 3,582,120
Length 92
Max. P 0.868786
window2207

overview

Window 7

Location 3,582,028 – 3,582,120
Length 92
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 80.71
Mean single sequence MFE -30.60
Consensus MFE -22.97
Energy contribution -23.02
Covariance contribution 0.06
Combinations/Pair 1.10
Mean z-score -1.93
Structure conservation index 0.75
SVM decision value 0.86
SVM RNA-class probability 0.868786
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3582028 92 + 22407834
-------UUAAUGCGCUAAACGGCCCAAGUAAAUGACCAAUAAUCAUGGGAGCU---GCCAGCUCUCCGGCUGCCGGUUGGUUGGCCACGAAAUAAGCAGGA
-------.......(((....(((((......((((.......)))).)).)))---(((((((..((((...))))..))))))).........))).... ( -26.10)
>DroVir_CAF1 58033 95 + 1
UUGAAUUUUAAUGCGCUAAACGGCGCAAGUAAAUGACCAAUAAUCAUGGGAGCU---GCCUGC--UCCGGCUGCCGGUUGGUCAGCUACAACUCCAGCAU--
...........((((((....)))))).(((..((((((((...(((.(((((.---....))--))).).))...))))))))..)))...........-- ( -33.80)
>DroPse_CAF1 54780 99 + 1
CUGCAUUUUAAUGCGCUAAACGGCGCAAGUAAAUGACCAAUAAUCAUGGGAGCUGCUGCCAGC--UUCGGCUGCCGGUUGGUCAGCAUCCAA-CAUCCAGCA
...(((((...((((((....))))))...))))).............(((((((....))))--))).((((...(((((.......))))-)...)))). ( -33.50)
>DroGri_CAF1 60579 95 + 1
GUGCUUUUUAAUGCGCUAAACGGCUCAAGUAAAUGACCAAUAAUCAUGGGAGCU---GCUUGC--UUCGGCUGCCGGUUGGUCAGCUCCAACUCCAACUC--
((((........))))....((((..(((((.....(((.......)))....)---))))((--....)).))))(((((......)))))........-- ( -26.30)
>DroMoj_CAF1 66176 86 + 1
AUGAAUUUUAAUGCGCUAAACGGCGCAAGUAAAUGACCAAUAAUCAUGGGAGCU---GCCUGC--UCCGGCUGCCGGUUGGUCAGAUCC------GG-----
...........((((((....))))))......((((((((...(((.(((((.---....))--))).).))...)))))))).....------..----- ( -30.40)
>DroPer_CAF1 54892 99 + 1
CUGCAUUUUAAUGCGCUAAACGGCGCAAGUAAAUGACCAAUAAUCAUGGGAGCUGCUGCCAGC--UUCGGCUGCCGGUUGGUCAGCAUCCAA-CAUCCAGCA
...(((((...((((((....))))))...))))).............(((((((....))))--))).((((...(((((.......))))-)...)))). ( -33.50)
>consensus
CUGCAUUUUAAUGCGCUAAACGGCGCAAGUAAAUGACCAAUAAUCAUGGGAGCU___GCCAGC__UCCGGCUGCCGGUUGGUCAGCUACAAA_CAAGCAG__
...........((((((....))))))......((((((((.....(((.((((..............)))).))))))))))).................. (-22.97 = -23.02 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:21 2006