| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 3,560,000 – 3,560,099 |
| Length | 99 |
| Max. P | 0.500000 |
| Location | 3,560,000 – 3,560,099 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 82.36 |
| Mean single sequence MFE | -23.18 |
| Consensus MFE | -17.66 |
| Energy contribution | -17.30 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.76 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3560000 99 - 22407834 CC--UUUAC--UUAUCGUUAAAGUGGCGUGCCAAAGCUACACGAGACCCGAUAAAUGUCACUGAUAUUUAAUUAAGUCUGGUCGACCAGGAGUCCAG-AACAGG ((--(...(--(((((((....(((((........))))))))).......((((((((...))))))))..))))(((((.(........).))))-)..))) ( -22.20) >DroVir_CAF1 33977 85 - 1 CC---ACUU--UUAUCGUUAAAGUGGCGUGCCAAAGCUACACGAGACUCGAUAAAUGUCACUGAUAUUUAAUUAAGUCUGGUCCGC-----A--------CAU- ((---((((--(.......))))))).((((.........((.(((((..(((((((((...))))))).))..))))).))..))-----)--------)..- ( -23.30) >DroEre_CAF1 29508 99 - 1 CC---UUAC--UUAUCGUUAAAGUGGCGUGCCAAAGCUACACGAGACCCGAUAAAUGUCACUGAUAUUUAAUUAAGUCUGGUCGACCAGGAGUCCAGGAACGGG ..---....--...((((....(((((........)))))))))..((((.((((((((...))))))))......(((((.(........).)))))..)))) ( -26.00) >DroYak_CAF1 30311 101 - 1 CCCUUUUAC--UUAUCGUUAAAGUGGCGUGCCAAAGCUACACGAGACCCGAUAAAUGUCACUGAUAUUUAAUUAAGUCUGGUCGACCAGGAGUCCAG-AACAGU ........(--(((((((....(((((........))))))))).......((((((((...))))))))..))))(((((.(........).))))-)..... ( -21.50) >DroMoj_CAF1 40883 83 - 1 CC---ACUU--UUAUCGUUAAAGUGGCGUGCCACAGCUACACGAGACUCGAUAAAUGUCACUGAUAUUUAAUUAAGUCUGGUUCGC-----A----------U- ((---((((--(.......))))))).........((...((.(((((..(((((((((...))))))).))..))))).))..))-----.----------.- ( -22.20) >DroAna_CAF1 31011 92 - 1 CU--UUCACGGUUAUCGUUAAAGUGGCGUGCCAAAGCUACACGAGACCCGAUAAAUGUCACUGAUAUUUAAUUAAGUCUGGUCGGCCAGGAAUA---------- ..--....(((...((((....(((((........)))))))))...))).((((((((...))))))))......(((((....)))))....---------- ( -23.90) >consensus CC___UCAC__UUAUCGUUAAAGUGGCGUGCCAAAGCUACACGAGACCCGAUAAAUGUCACUGAUAUUUAAUUAAGUCUGGUCGACCAGGAAUC______CAG_ ..............((((....(((((........)))))))))((((.((((((((((...)))))))......))).))))..................... (-17.66 = -17.30 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:08 2006