Locus 134

Sequence ID 2L_DroMel_CAF1
Location 411,940 – 412,060
Length 120
Max. P 0.562664
window208

overview

Window 8

Location 411,940 – 412,060
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 80.39
Mean single sequence MFE -46.70
Consensus MFE -28.12
Energy contribution -27.35
Covariance contribution -0.77
Combinations/Pair 1.34
Mean z-score -1.65
Structure conservation index 0.60
SVM decision value 0.06
SVM RNA-class probability 0.562664
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 411940 120 - 22407834
AAGCUACUCGUCUCGGGCGACACCAUGGACGUGGUGAAGCAGUCGGCGGCGCUAUGCCUGCUCCGCCUGUUCCGCUCCUCGCCGGACAUCAUUCCCGGUGGUGAGUGGACUUCGCGCAUU
..((..(.(((((.((......))..))))).)((((((.....(((((.((.......)).)))))...(((((((.(((((((.........))))))).)))))))))))))))... ( -54.10)
>DroVir_CAF1 4226 120 - 1
AAGCUGCUCGUCUCGGGCGAUACUAUGGAUGUGGUCAAGCAGUCGGCGGCCUUGUGUUUGCUGCGUCUGUUUCGCUCCUCGCCGGAUAUUAUACCCGGCGGUGAGUGGACCUCACGCAUU
..((((((((...))))))..........((.((((((((((.((.((((.........)))))).))))))(((((.(((((((.........))))))).))))))))).)).))... ( -47.60)
>DroPse_CAF1 2507 120 - 1
AAACUGCUUGUUUCUGGGGACACCAUGGACGUGGUGAAGCAGUCGGCUGCUCUGUGCCUGCUGCGGCUAUUCCGAUCAUCGCCUGACAUCAUACCCGGCGGCGAGUGGACCUCGCGCAUC
...(..(((((..(((((..((((((....))))))..(((((.(((........))).)))))(((.............)))..........)))))..)))))..)............ ( -45.22)
>DroGri_CAF1 2504 120 - 1
AAGCUGCUCGUCUCGGGCGAUACUAUGGAUGUGGUUAAGCAGUCGGCGGCAUUGUGCCUGCUGCGACUGUUUCGUUCAUCGCCAGACAUAAUACCGUUUGGCGAGUGGACAUCGCGAAUU
..((.(((((...)))))((((((((....))))).(((((((((.(((((.......)))))))))))))).((((((((((((((........))))))))).))))))))))..... ( -48.20)
>DroWil_CAF1 4638 120 - 1
AAAUUGUUGGUUUCCGGCGAUACAAUGGAUGUGGUAAAGCAAUCGGCUGCAUUAUGUUUAUUGCGUCUAUUUCGCUCAUCGCCAGACAUUAUUCCGGGCGGAGAAUGGACUUCGCGGAUC
....(((((((....(((((...((((((((..((((((((......)))......)))))..)))))))))))))....)))).)))....(((..((((((......))))))))).. ( -36.00)
>DroMoj_CAF1 2502 120 - 1
AAGCUGUUGGUGUCGGGCGACACUAUGGAUGUGGUCAAGCAGUCGGCGGCUUUGUGCUUGCUGCGGCUAUUUCGUUCUUCGCCCGAUAUAAUACCUGGCGGCGAGUGGACAUCACGCAUC
..(((((..(((((((((((....(((((.((((((..(((((.((((......)))).))))))))))))))))...))))))))))......)..)))))..(((.......)))... ( -49.10)
>consensus
AAGCUGCUCGUCUCGGGCGACACUAUGGAUGUGGUCAAGCAGUCGGCGGCAUUGUGCCUGCUGCGGCUAUUUCGCUCAUCGCCAGACAUAAUACCCGGCGGCGAGUGGACAUCGCGCAUC
....((((((...))))))..........(((((....(((((.(((........))).)))))......(((((((.(((((.(.........).))))).)))))))..))))).... (-28.12 = -27.35 +  -0.77)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:03 2006