Locus 1339

Sequence ID 2L_DroMel_CAF1
Location 3,544,637 – 3,544,729
Length 92
Max. P 0.666431
window2186

overview

Window 6

Location 3,544,637 – 3,544,729
Length 92
Sequences 5
Columns 92
Reading direction forward
Mean pairwise identity 89.13
Mean single sequence MFE -20.48
Consensus MFE -16.90
Energy contribution -17.62
Covariance contribution 0.72
Combinations/Pair 1.08
Mean z-score -1.47
Structure conservation index 0.83
SVM decision value 0.28
SVM RNA-class probability 0.666431
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3544637 92 + 22407834
GAUCUUGACUUAUUUGUGGAUAUAAUAUGUACGCAGUUGUGGUCAAAACAAUGGCACAUCGGUUUAUCCAUAAAUUAGUUGAAUUGUUUACC
....(..(((.(((((((((((....((((..((.(((((.......))))).)))))).....))))))))))).)))..).......... ( -24.20)
>DroSec_CAF1 13585 92 + 1
GAUCUUGACUUAUUUGUGGAUAUAAUAUGUACGCAGUUGUGGUCAAAAUGAUGGCACUUCGGCUUAUCCAUAAAUUAGUUGAAUUGUUUACC
....(..(((.(((((((((((......((.((.(((.((.(((.....))).))))).)))).))))))))))).)))..).......... ( -24.30)
>DroSim_CAF1 13871 92 + 1
GAUCUUGACUUAUUUGUGGAUAUAAUAUGUACGCAGUUGUGGUCAAAAUAAUGGCACUUCGGCUUAUCCAUAAAUUAGUUGAAUUGUUUACC
....(..(((.(((((((((((.....((....))((((..((((......))))....)))).))))))))))).)))..).......... ( -21.90)
>DroEre_CAF1 13876 92 + 1
GAUCUUGACUUAUUUGUGGAUAUAAUAUGUACGCAGUUGUGGUCAAAAUAAUGGCAUUUCGGUUUAGCCAAAAAUUUGUUGAAUAGUUUACC
....((((((...(((((.((((...)))).)))))....)))))).....((((...........))))...................... ( -14.50)
>DroYak_CAF1 14108 81 + 1
GAUCUUGACUUAUUUGUGGAUAUAAUAUGUACGCGGUUGUGGUCAAAAUAAUGGCUCUUCGGCUUGUGCAUAAAUUGGUUG-----------
((((((.((......)).)).....((((((((.(((((.(((((......)))))...)))))))))))))....)))).----------- ( -17.50)
>consensus
GAUCUUGACUUAUUUGUGGAUAUAAUAUGUACGCAGUUGUGGUCAAAAUAAUGGCACUUCGGCUUAUCCAUAAAUUAGUUGAAUUGUUUACC
....((((((.(((((((((((.........(((....)))((((......)))).........))))))))))).)))))).......... (-16.90 = -17.62 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:01 2006