| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 3,542,949 – 3,543,045 |
| Length | 96 |
| Max. P | 0.527522 |
| Location | 3,542,949 – 3,543,045 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 86.81 |
| Mean single sequence MFE | -29.75 |
| Consensus MFE | -24.42 |
| Energy contribution | -24.42 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.82 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.527522 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3542949 96 + 22407834 ----------------AGAAUCCAUAUCGA-AUG-GAUGGCCU------UAUGCAGGCGCCCUGUGUCGCAUGAUUAACGGCGUUAAAAUGCCAAUGUGACGCCACAUUGUGUACACAAA ----------------...((((((.....-)))-))).((((------.....))))....((((((((.........(((((....)))))((((((....))))))))).))))).. ( -30.00) >DroVir_CAF1 14259 112 + 1 GAUGCUGAUGCAUCUCCGAAACCAUAUCGA-AUC-CAUGGCCU------UAUGCAGGCGCCCUGUGUCGCAUGAUUAACGGCGUUAAAAUGCCAAUGUGACGCCACAUUGUGUACACAAA (((((....)))))..(((.......))).-...-....((((------.....))))....((((((((.........(((((....)))))((((((....))))))))).))))).. ( -31.80) >DroGri_CAF1 15075 102 + 1 -----------GUAGCCGAAUCCAUAUCGA-AUCCCAUGGCCU------UAUGCAGGCGCCCUGUGUCGCAUGAUUAACGGCGUUAAAAUGCCAAUGUGACGCCACAUUGUGUACACAAA -----------...((((...((((.....-.....))))..(------(((((.(((((...)))))))))))....)))).......((((((((((....))))))).)))...... ( -28.40) >DroWil_CAF1 21465 97 + 1 ----------------AGAAUCCAUAACGAAAUG-GAUGGCCU------UAUGCAGGCGCCCUGUGUCGCAUGAUUAACGGCGUUAAAAUGCCGAUGUGACGCCACAUUGUGUACACAAA ----------------...((((((......)))-)))(((..------...(((((...)))))(((((((......((((((....))))))))))))))))...((((....)))). ( -31.70) >DroMoj_CAF1 17356 97 + 1 ----------------CGCAUCCACAACGA-AUCCCAUGGCCU------UAUGCAGGCGCCCUGUGUCGCAUGAUUAACGGCGUUAAAAUGCCAAUGUGACGCCACAUUGUGUACACAAA ----------------.((.((......))-........((((------.....))))))..((((((((.........(((((....)))))((((((....))))))))).))))).. ( -25.00) >DroAna_CAF1 12664 102 + 1 ----------------AGAAUCCACAUCGA-AUG-GAUGGCCGGCAUCGAAUGCAGGCGCCCUGUGUCGCAUGAUUAACGGCGUUAAAAUGCCAAUGUGACGCCACAUUGUGUACACAAA ----------------...(((((......-.))-))).(((.((((...)))).)))....((((((((.........(((((....)))))((((((....))))))))).))))).. ( -31.60) >consensus ________________AGAAUCCAUAUCGA_AUC_CAUGGCCU______UAUGCAGGCGCCCUGUGUCGCAUGAUUAACGGCGUUAAAAUGCCAAUGUGACGCCACAUUGUGUACACAAA .....................................((((...........(((((...)))))((((((((.....)(((((....))))).)))))))))))..((((....)))). (-24.42 = -24.42 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:00 2006