Locus 1336

Sequence ID	2L_DroMel_CAF1
Location	3,540,969 – 3,541,060
Length	91
Max. P	0.581362

overview

Window 3

Location	3,540,969 – 3,541,060
Length	91
Sequences	5
Columns	93
Reading direction	reverse
Mean pairwise identity	86.82
Mean single sequence MFE	-20.04
Consensus MFE	-14.14
Energy contribution	-13.66
Covariance contribution	-0.48
Combinations/Pair	1.26
Mean z-score	-1.75
Structure conservation index	0.71
SVM decision value	0.10
SVM RNA-class probability	0.581362
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3540969 91 - 22407834
UCCUACUUCCAGAAAGUUCC--CCUAGAAUAUGGGUUCUGAUUUCUGCGAUUUCGCACCAGAUUCAUUGGAAUUUUCGCACAAGUGCCAAAUC
...........(((((((((--((((.....)))).((((.....((((....)))).))))......)))))))))(((....)))...... ( -22.80)
>DroSec_CAF1 9942 91 - 1
UCUUACUUCUGGAAAGUUCC--CCUGGAAUAUGGGUUCUGAGUUCUCCGUUUUCCCACCAGAUUCAUUGGAAUUUUCGCACAAGUGCCAAAUC
...(((((.(((((((((((--....((((.((((..(.((....)).)....))))....))))...))))))))).)).)))))....... ( -23.00)
>DroSim_CAF1 10268 91 - 1
UCUUACUUCUGGAAAGUUCC--CCUGGAAUAUGGGUUCUGAGUUCUCCGUUUUCCCACCAGAUUCAUUGGAAUUUUCGCACAAGUGCCAAAUC
...(((((.(((((((((((--....((((.((((..(.((....)).)....))))....))))...))))))))).)).)))))....... ( -23.00)
>DroEre_CAF1 10222 88 - 1
U---ACUUCUAGAAAGUUCC--CCUGGAAUAUGCGUUCUGAUUUCUCCGAUUUCCCACCCGGUUCAUUGGAAUUUUCGCACAAGUGUUAACUC
(---((((...(((((((((--..((((...((.((...((..((...))..))..)).)).))))..)))))))))....)))))....... ( -16.60)
>DroYak_CAF1 10332 93 - 1
UCCCACUUCUAGAAAGUUUUUUUUUGGAAUAUGCGUUCUGAAUUCUCCGUUUUCCCACCCCAUUCAUUGGAAUUUUCGCACAAGUGUUAACUA
...(((((...(((((((....((..((((....))))..)).................(((.....))))))))))....)))))....... ( -14.80)
>consensus
UCCUACUUCUAGAAAGUUCC__CCUGGAAUAUGGGUUCUGAGUUCUCCGUUUUCCCACCAGAUUCAUUGGAAUUUUCGCACAAGUGCCAAAUC
...........(((((((((......((((.(((.....((((.....)))).....))).))))...)))))))))(((....)))...... (-14.14 = -13.66 +  -0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:58 2006