Locus 1327

Sequence ID 2L_DroMel_CAF1
Location 3,501,459 – 3,501,571
Length 112
Max. P 0.835841
window2169

overview

Window 9

Location 3,501,459 – 3,501,571
Length 112
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 77.94
Mean single sequence MFE -29.90
Consensus MFE -20.83
Energy contribution -20.00
Covariance contribution -0.83
Combinations/Pair 1.38
Mean z-score -1.48
Structure conservation index 0.70
SVM decision value 0.73
SVM RNA-class probability 0.835841
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3501459 112 - 22407834
AAUAU-------UACAGGUUUGCCACGCUGGAGGUGAUGCACUACUAUGGCAUUCUGUUGGAGGACUUCAACAACAACGGAGAGUUUGUCAAUGACUGCAUCUUCACCAUGAUGCAUCA
.....-------.(((..(((((((...(((.((((...)))).)))))))..(((((((..(........)..))))))))))..)))...(((.((((((........))))))))) ( -29.80)
>DroVir_CAF1 8185 119 - 1
UUUGUUAACCCUAACAGAUUUGCCACCUUGGAGGUGAUGCACUACUAUGGCAUUCUCUUGGAGGACUUCAGCAACAAUGGCGAAUAUGUCAACGACUGCAUCUUUACCAUGAUGCAUCA
.((((((....))))))((((((((((((.(((..(((((.(......))))))..))).)))).............))))))))........((.((((((........)))))))). ( -34.51)
>DroGri_CAF1 26512 118 - 1
UUUGCUU-GCUUAUCAGAUUCGCCACUUUGGAGGUGAUGCACUACUAUGGUAUUCUGCUGGAGGAUUUUAAUAAUAAUGGCGAGUUUGUUAACGACUGCAUCUUUACUAUGAUGCAUCA
.......-..(((.((((((((((((((..(.((.(((((.(......)))))))).)..))).(((.....)))..))))))))))).))).((.((((((........)))))))). ( -33.00)
>DroWil_CAF1 32661 112 - 1
CUUUU-------UUUAGAUUUGCCACCCUGGAAGUGAUGCAUUAUUAUGGCAUUCUUUUGGAGGAUUUCAAUAAUAAUGGUGAAUUUGUUAAUGAUUGUAUAUUCACAAUGAUGCAUCA
.....-------..((((((..((((((..((((.(((((.........)))))))))..).))(((.....)))..)))..))))))...((.(((((......))))).))...... ( -24.00)
>DroMoj_CAF1 9299 119 - 1
UCUGCUACUCCCACUAGAUUUGCCACUCUGGAGGUAAUGCACUACUAUGGCAUUCUCCUGGAGGACUUUGAUAACAAUGGCGAGUUCGUCAACGAUUGCAUCUUUACCAUGAUGCACCA
.................(((((((((((..(..(.(((((.(......)))))))..)..)))....(((....)))))))))))(((....))).((((((........))))))... ( -31.40)
>DroAna_CAF1 6492 113 - 1
GUUAU------UUUUAGGUUCGCCACGUUAGAGGUAAUGCACUAUUAUGGUAUCCUCCUGGAGGACUUCAGCAACAACGGAGAAUUCGUCAAUGACUGUAUCUUUACCAUGAUGCAUCA
(((((------(..(..((((.((......((((..((((.(......)))))))))(((((....))))).......)).))))..)..))))))((((((........))))))... ( -26.70)
>consensus
UUUGU______UAUCAGAUUUGCCACCCUGGAGGUGAUGCACUACUAUGGCAUUCUCCUGGAGGACUUCAACAACAAUGGCGAAUUUGUCAACGACUGCAUCUUUACCAUGAUGCAUCA
..............(((((((((((.....(((((.((((.(......)))))(((.....))))))))........))))))))))).....((.((((((........)))))))). (-20.83 = -20.00 +  -0.83)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:44 2006