Locus 1326

Sequence ID	2L_DroMel_CAF1
Location	3,498,419 – 3,498,513
Length	94
Max. P	0.700384

overview

Window 8

Location	3,498,419 – 3,498,513
Length	94
Sequences	5
Columns	94
Reading direction	forward
Mean pairwise identity	97.66
Mean single sequence MFE	-34.98
Consensus MFE	-30.44
Energy contribution	-30.08
Covariance contribution	-0.36
Combinations/Pair	1.07
Mean z-score	-1.49
Structure conservation index	0.87
SVM decision value	0.35
SVM RNA-class probability	0.700384
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3498419 94 + 22407834
UGUUCAACAUGAGCAGCAGCCGUCGCAAUCGGAAUCGCAAAAUCGAAGGAGCAGCUAGCUCCGCCAGCGGGUGAGCUGCAUCUGAUCGUGUGGG
(((((.....)))))....(((.(((.((((((.........((....))((((((.((.(((....))))).)))))).)))))).)))))). ( -36.50)
>DroSec_CAF1 7380 94 + 1
UGUUCAACAUGAGCAGCAGCCGUCGCAAUCGGAAUCGCAAAAUCGCAGGAGCAGCUAGCUCCGCCAGCGGGUGAGCUGCAUCUGAUCGUGUGGG
(((((.....)))))....(((.(((.((((((...((......))....((((((.((.(((....))))).)))))).)))))).)))))). ( -36.50)
>DroSim_CAF1 7424 94 + 1
UGUUCAACAUGAGCAGCAGCCGUCGCAAUCGGAAUCGCAAAAUCGCAGGAGCAGCUAGCUGCGCCAGCGGGUGAGCUGCAUCUGAUCGUGUGGG
(((((.....)))))....(((.(((.((((((...((......))....(((((((.((((....)))).).)))))).)))))).)))))). ( -35.70)
>DroEre_CAF1 5290 94 + 1
UGUUCAACAUGAGCAGCAGCCGUCGCAAUCGGAAUCGCAAAAUCGCAGGAGCAGCUAGCUCCACCAGCGGGUGAGCUGCAUCUGAUCGUGUGGG
(((((.....)))))....(((.(((.((((((...((......))....((((((.(((((....).)))).)))))).)))))).)))))). ( -33.50)
>DroYak_CAF1 5325 94 + 1
UGUUCAACAUGAGCAGCAGCCGUCGCAAUCGGAAUCGGAAAAUCGCAGGAGCAGCUAGCUCCACCAGCGGGUGAGCUCCAUCUGAUCGUGUGGG
(((((.....)))))....(((.(((.((((((...(((...((((.(((((.....))))).((...))))))..))).)))))).)))))). ( -32.70)
>consensus
UGUUCAACAUGAGCAGCAGCCGUCGCAAUCGGAAUCGCAAAAUCGCAGGAGCAGCUAGCUCCGCCAGCGGGUGAGCUGCAUCUGAUCGUGUGGG
(((((.....)))))....(((.(((.((((((...(((...((...(((((.....)))))(((....)))))..))).)))))).)))))). (-30.44 = -30.08 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:43 2006