Locus 1323

Sequence ID 2L_DroMel_CAF1
Location 3,481,938 – 3,482,042
Length 104
Max. P 0.584151
window2164

overview

Window 4

Location 3,481,938 – 3,482,042
Length 104
Sequences 4
Columns 104
Reading direction forward
Mean pairwise identity 91.67
Mean single sequence MFE -24.65
Consensus MFE -19.65
Energy contribution -21.90
Covariance contribution 2.25
Combinations/Pair 1.03
Mean z-score -1.58
Structure conservation index 0.80
SVM decision value 0.10
SVM RNA-class probability 0.584151
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3481938 104 + 22407834
AAUUUCUUCAGGAAGGUGAUCAAAUGAGUAAUUCAAAGGGGAGACAUAAAGUUGGUCGAGGUAUUAAAUCUUGGCACACAUGUAAUUGCUUAUGUGACAUCACA
..((((....))))((((.(((.((((((((((((....(....).....((..((((((((.....))))))))..)).)).)))))))))).)))))))... ( -27.30)
>DroSim_CAF1 9139 104 + 1
GAUUUCUUAAGGAUGGUGAUCAAAUGAGUAAUUAAAAGGGGAGACAUAAAGUUGGUCGAGGUAUUAAAUCUUGGCACACAUGUAAUUGCUUAUGUGACAUCACA
.............(((((.(((.(((((((((((.....(....).....((..((((((((.....))))))))..))...))))))))))).)))))))).. ( -27.90)
>DroEre_CAF1 9444 103 + 1
GAUUUCUUUAGGAAGUUAAUCAAAUGAGUAAUUA-AUGGGGAGACAUAAAGUUGGUCGGCGUAUUAAAUCUUGGCACACAUGUAAUUGCUUAUGUGACAUCACA
((((((.....))))))..(((.(((((((((((-(((.(....).......(((((((.((.....)).))))).))))).))))))))))).)))....... ( -20.60)
>DroYak_CAF1 9220 104 + 1
GAUUUCUUCAGGAAGGCGAUCAAAUGUGUAAUUAAAUGGGGAGACACAAAGUUGGUGGGGGGAUUUAAUCUUGGCACACAUGUAAUUGCUUAUGUGACAUCACA
(((.((..((...(((((((...((((((.......((.(....).))......((.((((.......)))).))))))))...))))))).)).)).)))... ( -22.80)
>consensus
GAUUUCUUCAGGAAGGUGAUCAAAUGAGUAAUUAAAAGGGGAGACAUAAAGUUGGUCGAGGUAUUAAAUCUUGGCACACAUGUAAUUGCUUAUGUGACAUCACA
..............((((.(((.(((((((((((.(((.(....).......((((((((((.....)))))))).))))).))))))))))).)))))))... (-19.65 = -21.90 +   2.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:39 2006