Locus 1322

Sequence ID 2L_DroMel_CAF1
Location 3,481,131 – 3,481,239
Length 108
Max. P 0.701718
window2163

overview

Window 3

Location 3,481,131 – 3,481,239
Length 108
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 82.22
Mean single sequence MFE -49.93
Consensus MFE -31.29
Energy contribution -31.32
Covariance contribution 0.03
Combinations/Pair 1.23
Mean z-score -2.24
Structure conservation index 0.63
SVM decision value 0.35
SVM RNA-class probability 0.701718
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3481131 108 - 22407834
GGCUAAUUCCUUGCUGCUGGAGCAGCAGCAGCUUGCCAUCCAGCCCAGAUCCCAGGGUGGUGCAUCGGGAGGGGAUGCCAUUGCCUUGGGAUCGGGCGGCCUGGGCUU
(((.......(((((((((...)))))))))...))).....((((.((((((((((..(((((((.......)))).)))..))))))))))))))(((....))). ( -58.20)
>DroPse_CAF1 9993 102 - 1
GGCCAAUUCCUUGCUCCUCGAGCAGCAGUCCCUUUCUAUCCAGCCACGUUCACAGGGCGGU----CA--GGGAGAUGCCAUCGCUCUCGGUUCAGGAGGUCUGGGCUU
((((.((..((((..((..((((.(((.(((((......((.(((.(.......)))))).----.)--))))..)))....))))..))..))))..))...)))). ( -33.90)
>DroSim_CAF1 8332 108 - 1
GGCCAAUUCCCUGCUGCUGGAGCAGCAGCAGCUUGCCAUCCAGCCCCGAUCCCAGGGUGGAGCAUCGGGAGGAGAUGCCAUUGCCUUGGGCUCGGGCGGCCUGGGCUU
((((......(((((((((...)))))))))...........((((.((.(((((((..(.(((((.......)))))..)..))))))).))))))))))....... ( -55.80)
>DroEre_CAF1 8637 108 - 1
GGCCAAUUCCCUGCUGCUGGAGCAGCAGCAGCUGGCCAUCCAGCCCAGAUCCCAGGGCGGAGCACUGGGCGGAGAUGCCAUUGCCUUGGGAUCGGGUGGCCUGGGCUU
(((((.....(((((((((...))))))))).)))))....((((((((((((((((((.....)..((((....))))...)))))))))))((....)))))))). ( -59.70)
>DroYak_CAF1 8413 108 - 1
GGCCAAUUCCCUGCUGCUGGAGCAGCAGCAGCUUGCCAUCCAGCCGAGAUCCCAGGGUGGAGCACUGGGCGGAGAUGCCAUUGCCCUGGGAUCGGGUGGCCUGGGCUU
((((......(((((((((...)))))))))(..(((((((......((((((((((..(.......((((....)))).)..)))))))))))))))))..))))). ( -57.20)
>DroPer_CAF1 10064 102 - 1
GGCCAAUUCCUUGCUCCUUGAGCAGCAGUCCCUUUCUAUCCAGCCACGUUCACAGGGCGGU----CA--GGGAGAUGCCAUCGCUCUCGGUUCAGGAGGUCUGGGCUU
((((.((..((((..((..((((.(((.(((((......((.(((.(.......)))))).----.)--))))..)))....))))..))..))))..))...)))). ( -34.80)
>consensus
GGCCAAUUCCCUGCUGCUGGAGCAGCAGCAGCUUGCCAUCCAGCCCAGAUCCCAGGGCGGAGCA_CGGGAGGAGAUGCCAUUGCCCUGGGAUCGGGAGGCCUGGGCUU
(((.......(((((((....)))))))......))).(((((((..((.((((((((((.....)....((.....))..))))))))).))....)).)))))... (-31.29 = -31.32 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:38 2006