| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 3,479,334 – 3,479,424 |
| Length | 90 |
| Max. P | 0.700950 |
| Location | 3,479,334 – 3,479,424 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 76.37 |
| Mean single sequence MFE | -32.43 |
| Consensus MFE | -10.93 |
| Energy contribution | -10.23 |
| Covariance contribution | -0.69 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.46 |
| Structure conservation index | 0.34 |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.700950 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3479334 90 + 22407834 UCAAGCAGACCAAGUCGCUGAAGAUUGAGGACCAGGAACAGUUCCAACUGGAUCUGUAG---GGGGUGUGGCGU---GUACACCGCCA--UGCAGCAA ....((...((.((((......))))..)).((....((((.(((....))).))))..---.))((((((((.---(....))))))--))).)).. ( -28.90) >DroPse_CAF1 7440 92 + 1 UUAAGAAGACCCAAUCGCUGAAGAUCGAGGAUCAGGAGCAGUUCCAGCUGGAGCUGUAA---CCG-UUCAGCGGGUCAAUUCCAACCA--AGCAGCAA .......(((((....((((((((((...)))).((.((((((((....))))))))..---)).-)))))))))))...........--........ ( -32.10) >DroEre_CAF1 6868 89 + 1 UCAAGCAGACCAAGUCCCUGAAGAUCGAGGACCAGGAACAGUUCCAGCUGGACCUGUAG---G-GGUCUGGCUU---GGAGCCCGCCA--AGCAGCAA .....((((((..((((.((.....)).))))((((..((((....))))..))))...---.-))))))((((---((......)))--)))..... ( -36.40) >DroYak_CAF1 6612 92 + 1 UCAAGCAGACCAAGUCGCUGAAGAUCGAGGACCAGGAGCAGUUCCAACUGGAUCUGUAG---GGGGUCUCGGUU---GGAUGACGCCAACAGCAGCAA ....((.(((...)))((((..(((((((..((....((((.(((....))).))))..---.))..)))))))---((......))..)))).)).. ( -32.60) >DroAna_CAF1 6693 93 + 1 UGAAGAAGGCACAGUCCCUGAAGAUCGAAGAUCAGGAACAGUUCCAGCUGGAACUGUAAUCUGGGACGGGGUUU---AAUUCCCUCCA--AGCAGCAA ....(...((...(((((.((.((((...))))....((((((((....))))))))..)).)))))((((...---...))))....--.))..).. ( -32.90) >DroPer_CAF1 7492 92 + 1 UGAAGAAGACCCAAUCGCUGAAGAUCGAGGAUCAGGAGCAGUUCCAGCUGGAGCUGUAA---CCG-UUCGGCGGGUCAAUUCCAACCA--AGCAGCAA .(((...(((((....((((((((((...)))).((.((((((((....))))))))..---)).-)))))))))))..)))......--........ ( -31.70) >consensus UCAAGAAGACCAAGUCGCUGAAGAUCGAGGACCAGGAACAGUUCCAGCUGGAGCUGUAA___GGGGUCUGGCGU___AAAUCCCGCCA__AGCAGCAA .........((..(((..((.....))..)))..)).((((.(((....))).))))......................................... (-10.93 = -10.23 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:35 2006