Locus 1318

Sequence ID 2L_DroMel_CAF1
Location 3,472,226 – 3,472,343
Length 117
Max. P 0.706205
window2157

overview

Window 7

Location 3,472,226 – 3,472,343
Length 117
Sequences 4
Columns 117
Reading direction forward
Mean pairwise identity 83.41
Mean single sequence MFE -25.81
Consensus MFE -18.89
Energy contribution -19.32
Covariance contribution 0.44
Combinations/Pair 1.09
Mean z-score -1.71
Structure conservation index 0.73
SVM decision value 0.36
SVM RNA-class probability 0.706205
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3472226 117 + 22407834
AAGGUUCUGGCCAAUAAAAUCUGCGAUAAAAACCAACUGGAACAGCAGUGGAAAGUUGGGCGAAAUGCGCCAUAUGAUCCACAAAGGGAGCCUCAUUAAUAUGUAUAGCACAGCAAU
.(((((((.............(((........((....))....)))(((((..((..((((.....))))..))..)))))....)))))))........(((........))).. ( -25.20)
>DroSec_CAF1 5931 114 + 1
AAAGUUCUGGCUAAUAAAAUCUGCGAUAAAAACCAACUGAAACAGCAAUGGAAAGUUGGGCGAAAUGCGCCAUAUGAUCCACAAAGGGAACCUAAUUAAAAUGUAUAGCAC---AAU
.......((((((.........(((.......((((((....((....))...))))))........))).......(((......)))................)))).)---).. ( -20.96)
>DroSim_CAF1 5421 114 + 1
AAGGUUCUGGCCAAUAAAAUCUGCGAUAAAAACCAACUGAAACAGCAAUGGAAAGUUGGGCGAAACGCGCCAUAUGAUCCACAAAGGGAGCCUAAUUAAAAUGUAUAGCAC---AAU
.((((((((((.....................((((((....((....))...))))))(((...)))))))......((.....))))))))..................---... ( -26.20)
>DroEre_CAF1 5999 98 + 1
AAGGUUCUGGCCAAUAAAAUCUGCGAUAGAAAUCAACUUGAGCAGCAGUGGAAAGUGGGGCUAAGUGCCCCCUAUGAUCCACAAAGGGAGCCCAGUUA-------------------
..((((((............((((...((.......))...))))..(((((.((.(((((.....)))))))....)))))....))))))......------------------- ( -30.90)
>consensus
AAGGUUCUGGCCAAUAAAAUCUGCGAUAAAAACCAACUGAAACAGCAAUGGAAAGUUGGGCGAAAUGCGCCAUAUGAUCCACAAAGGGAGCCUAAUUAAAAUGUAUAGCAC___AAU
.(((((((.............(((....................)))(((((..(((((((.....)).))).))..)))))....)))))))........................ (-18.89 = -19.32 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:32 2006