Locus 1315

Sequence ID 2L_DroMel_CAF1
Location 3,459,501 – 3,459,609
Length 108
Max. P 0.722559
window2154

overview

Window 4

Location 3,459,501 – 3,459,609
Length 108
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 78.66
Mean single sequence MFE -39.13
Consensus MFE -23.58
Energy contribution -23.42
Covariance contribution -0.16
Combinations/Pair 1.38
Mean z-score -1.70
Structure conservation index 0.60
SVM decision value 0.40
SVM RNA-class probability 0.722559
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3459501 108 - 22407834
CAUAGUUGGCCAGGCAACAGAGCAUGCGCUGCUCCCAGGUCACAGCCGCUGCUCCGCCGCUUCCAGCCACCGAAUCUGGCUGCUGGGCAUUGGGGAAUCCAAGUAGCU
....((.((((.(....).(((((.....)))))...))))))....(((((...(((.(...((((((.......))))))..)))).((((.....))))))))). ( -37.60)
>DroVir_CAF1 2107 105 - 1
CAUAGUUGGCCAGGCAGCAGAGCAUGCGCUGUUCCCAGUUAACAGCUGCGCCUCCAA---CACCGGACACCGACUCCGGUUGCUGGGCAUUUGGAAAUCCGAGCAGCU
....((((((..((.(((((.(....).)))))))..))))))((((((((((....---.((((((.......))))))....))))..((((....)))))))))) ( -41.60)
>DroPse_CAF1 2116 102 - 1
CAUAAUUGGCCAGGCAACAGAGCAUACGCUGCUCCCAGGUGAC---CGCUGCUCCACCACU---GGCUACAGAGUCCAGCUGCUGGGCAUUGGGAAAGCCCAACAGCU
......(((((((......(((((.....)))))...((((..---........)))).))---)))))........(((((.(((((.........))))).))))) ( -37.20)
>DroWil_CAF1 11193 105 - 1
CAUAGUUGGCCAGACAACAGAGCAUACGCUGCUCCCAAGUGACAGCGG---CUCCUCCACUGUGGGCCACCGAAUCCGGUUGUUGGGCAUUGGGAAAGCCUAGCAACU
....(.(((((..(((...(((....(((((.((......))))))).---...)))...))).))))).)......(((((((((((.........))))))))))) ( -37.50)
>DroAna_CAF1 2090 105 - 1
CAAAGUUGGCCAAACAGCAGAGCAUGCGCUGCUCCCAGGUGACUGUG---GCUCCAGCUCCCCCGGCCACCGAAUCCGGCUGCUGGGCAUUCGGAAAUCCCAGUAGCU
....(.(((((.....(((.....)))((((..(((((....))).)---)...))))......))))).)......((((((((((.(((....))))))))))))) ( -43.70)
>DroPer_CAF1 2117 102 - 1
CAUAAUUGGCCAGGCAACAGAGCAUACGCUGCUCCCAGGUGAC---CGCUGCUCCACCACU---GGCUACAGAGUCCAGCUGCUGGGCAUUGGGAAAGCCCAACAGCU
......(((((((......(((((.....)))))...((((..---........)))).))---)))))........(((((.(((((.........))))).))))) ( -37.20)
>consensus
CAUAGUUGGCCAGGCAACAGAGCAUACGCUGCUCCCAGGUGACAGCCGCUGCUCCACCACU_CCGGCCACCGAAUCCGGCUGCUGGGCAUUGGGAAAGCCCAGCAGCU
......(((((.(....).(((((.....)))))..............................)))))........((((((((((...........)))))))))) (-23.58 = -23.42 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:29 2006