Locus 1313

Sequence ID 2L_DroMel_CAF1
Location 3,448,275 – 3,448,388
Length 113
Max. P 0.500000
window2151

overview

Window 1

Location 3,448,275 – 3,448,388
Length 113
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 83.26
Mean single sequence MFE -37.42
Consensus MFE -25.10
Energy contribution -25.85
Covariance contribution 0.75
Combinations/Pair 1.12
Mean z-score -1.52
Structure conservation index 0.67
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3448275 113 - 22407834
GGGCUAGGGGGUACAGUGAAGCCUGGCGAAGUGCGAAGCACUGCUGAGUGAGCACUGAACGGGCAUUAACUAGAGUCACUUAAUUAUCCAGGUUGUUCACCAGCUAAGCGCGU-------
(.(((.(((((((.(((((.(((((....(((((....((((....)))).)))))...))))).....(....))))))....))))).(((.....)))..)).))).)..------- ( -35.60)
>DroSec_CAF1 15186 118 - 1
GGGCGAGGAGCCACAGUGAAGCCUGGCGAAGUGCGAAGCACUGCUGAGUGAGCACUGAAUGGGCAUUACCCAGUGUCACUUAAUU--CCAGGUGGUUCACCAGCUAAGCGCGCUUGUUUG
(.(((...(((....(((((((((((...(((((...)))))..(((((((.(((((...((......))))))))))))))...--))))))..)))))..)))...))).)....... ( -43.80)
>DroEre_CAF1 14443 107 - 1
GGACAAAGGGGUAAAGUGAAGCCUGGCGAAGUGCGAAGCACUGCUGAGUGAGCACUGAAUGGGACUUACUUAG------UGAAUUAUCUAGGUGGUUCAACAGCUAAGCGUUU-------
....................((.((((..(((((...)))))((((((((((..((....))..)))))))))------)(((((((....)))))))....)))).))....------- ( -31.60)
>DroYak_CAF1 2373 113 - 1
GGGCGAGGGGGUAAAGUGAAGCCUGGCGAAGUGCGAAGCACUGCUGAGUGAGCACUGAACGGGAAUUACUUAGAGUCAAUUAAUUAUCUAGGUGGUUCACCAGCUAAGCGCUU-------
.((((...((((..((((..((..(((..(((((...))))))))..))...))))..))((((((((((((((............)))))))))))).))..))...)))).------- ( -38.70)
>consensus
GGGCGAGGGGGUAAAGUGAAGCCUGGCGAAGUGCGAAGCACUGCUGAGUGAGCACUGAACGGGAAUUACCUAGAGUCACUUAAUUAUCCAGGUGGUUCACCAGCUAAGCGCGU_______
..(((....(((...(((((((((((...(((((...))))).((((((((...((....))...))))))))..............))))))..)))))..)))...)))......... (-25.10 = -25.85 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:26 2006