| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 3,443,969 – 3,444,077 |
| Length | 108 |
| Max. P | 0.848535 |
| Location | 3,443,969 – 3,444,077 |
|---|---|
| Length | 108 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 72.70 |
| Mean single sequence MFE | -27.83 |
| Consensus MFE | -16.50 |
| Energy contribution | -17.50 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.848535 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3443969 108 + 22407834 AAAUGCA-CGUU-AAGAUACAAGUA----------AAAAUGCUAAGGGCAGGUUGCUUUGACUCAGCAGAUGUCUCGCAAGUGGCCUUUUGACUUGGCCAUUAACGCAAACUUGACACAU .......-.(((-(((.........----------....(((...(((((..(((((.......))))).))))).)))(((((((.........)))))))........)))))).... ( -28.10) >DroAna_CAF1 37462 104 + 1 AUAUUAAACCCGAAUGACAAAAAAA----------AAAAUG-UAAGGGCACGUGGGUUGGUGUC-----AUGCCGUCUAAGUGGCCUUUUGACUUGGCCAUUAACGUAAACUUGACACAU ......((((((..((.(.......----------......-...)..))..)))))).(((((-----(...(((...(((((((.........))))))).)))......)))))).. ( -25.49) >DroYak_CAF1 35392 117 + 1 AAAUGCA-CAUU-AAAA-ACAAGAAAAAAAAUUGAAAAAUGUUAAGGGCAGAUUGCUUUGGCUUGGCAGAUGUCUCGCAAGUGGCCUUUUGACUUGGCCAUUAACGCGAACUUGACACAU .......-....-....-.....................(((((((((((..(((((.......))))).))))((((.(((((((.........)))))))...)))).)))))))... ( -29.90) >consensus AAAUGCA_CAUU_AAGA_ACAAGAA__________AAAAUG_UAAGGGCAGGUUGCUUUGACUC_GCAGAUGUCUCGCAAGUGGCCUUUUGACUUGGCCAUUAACGCAAACUUGACACAU .......................................((.((((((((...((((.......))))..)))).....(((((((.........)))))))........)))).))... (-16.50 = -17.50 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:22 2006