Locus 1309

Sequence ID 2L_DroMel_CAF1
Location 3,443,248 – 3,443,347
Length 99
Max. P 0.767751
window2145

overview

Window 5

Location 3,443,248 – 3,443,347
Length 99
Sequences 3
Columns 119
Reading direction reverse
Mean pairwise identity 74.00
Mean single sequence MFE -23.43
Consensus MFE -16.22
Energy contribution -17.00
Covariance contribution 0.78
Combinations/Pair 1.11
Mean z-score -1.37
Structure conservation index 0.69
SVM decision value 0.52
SVM RNA-class probability 0.767751
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3443248 99 - 22407834
GGGCGAGCGUGUGAAUGAAAAAUAAAUAUGUGCGAUAGAACGGAUAGAAAGUCUGCUUUCGAAUAGGAGUUUUAUUAUAUACUCUUGCAGAUUAAGUCG--------------------
..(((((.((((((((((((......(((...(((.((..(((((.....))))))).))).)))....))))))).))))).)))))...........-------------------- ( -22.40)
>DroSim_CAF1 32325 119 - 1
GAGCGAGCGUGUGAAUGAAAAAUAAAUAUGUGCGAUAAAACGGAUAGAAAGUCUGCUUUCGUAAAGAAGUUUUAUUAUAUACUCUUGCAGUUUAAACUGACCGGUACAAACUUUUUAAA
..(((((.((((((((((((..........(((((.....(((((.....)))))...)))))......))))))).))))).)))))(((((..(((....)))..)))))....... ( -25.39)
>DroYak_CAF1 34671 109 - 1
AGACGAGCGUGUGAAUGAAAAAUAAAUAUGUGCAAUAAAAUGGAUGGAAAGUCUGCUUUCGCCAAGGAGUUUU---AUAUGCUCUUCCAAAUGAAACUGGACUCAACAAAUU-------
....(((((((((((...........(((.....)))...(((...(((((....))))).)))......)))---)))))))).((((........))))...........------- ( -22.50)
>consensus
GGGCGAGCGUGUGAAUGAAAAAUAAAUAUGUGCGAUAAAACGGAUAGAAAGUCUGCUUUCGAAAAGGAGUUUUAUUAUAUACUCUUGCAGAUUAAACUG__C___ACAAA_U_______
..(((((.((((((((((((........(((.((......)).)))(((((....))))).........))))))).))))).)))))............................... (-16.22 = -17.00 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:20 2006