Locus 1308

Sequence ID 2L_DroMel_CAF1
Location 3,442,166 – 3,442,286
Length 120
Max. P 0.957435
window2144

overview

Window 4

Location 3,442,166 – 3,442,286
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 69.42
Mean single sequence MFE -24.77
Consensus MFE -15.51
Energy contribution -15.83
Covariance contribution 0.31
Combinations/Pair 1.07
Mean z-score -1.71
Structure conservation index 0.63
SVM decision value 1.48
SVM RNA-class probability 0.957435
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3442166 120 - 22407834
UAGGUGCGGUUGUUUCGCAUCGCAACAUCAACACGACGAUGCAUUGUACCCGCCAGCCCCAGGCCCCACUCCCUAACCCCCCACCCCCCCCCCCUCCCUGGCCAGUAUAUUUUAACCAAC
..(((((((.....)))))))(((.(.((.....)).).)))..(((((..(((((....(((.............................)))..)))))..)))))........... ( -23.75)
>DroAna_CAF1 35619 92 - 1
UAGGUGCGGUCGUUUCGCAUCGCGACUUCAACACGAUGAUGCAUUGUGCCG-C---CCCCAUGCCCGCC------------------------UUUUUUCGCUCUAUCGUUUUGGCCAAG
..((.(((((......((((((((.........)).)))))).....))))-)---))........(((------------------------......((......))....))).... ( -21.00)
>DroSim_CAF1 31286 95 - 1
UAGGUGCGGUUGUUUCGCAUCGCAACAUCAACACGAUGAUGCAUUGUACCCGCCAGCC--A-GCCCCCCUC-------------C---------CCCCUGGCCAGUAUAUUUUAACCAAC
..(((((((.....)))))))(((.((((.....)))).)))..(((((..(((((..--.-.........-------------.---------...)))))..)))))........... ( -26.99)
>DroYak_CAF1 33579 102 - 1
UAGGUGCGGUUGUUUCGCAUCGCAACAUCAACACGAUGAUGCAUUGUGCCCAACAGCC--A-GCC---------AACCUCC------CCCUCCCCCCCUGGCCAUUAUAUUUUAACCAAC
..(((..(((((((.((((..(((.((((.....)))).)))..))))...)))))))--.-(((---------(......------...........))))............)))... ( -27.33)
>consensus
UAGGUGCGGUUGUUUCGCAUCGCAACAUCAACACGAUGAUGCAUUGUACCCGCCAGCC__A_GCCCCCC________________________CCCCCUGGCCAGUAUAUUUUAACCAAC
..(((((((.....)))))))(((.((((.....)))).))).............................................................................. (-15.51 = -15.83 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:19 2006