Locus 1307

Sequence ID 2L_DroMel_CAF1
Location 3,442,014 – 3,442,110
Length 96
Max. P 0.689347
window2143

overview

Window 3

Location 3,442,014 – 3,442,110
Length 96
Sequences 3
Columns 96
Reading direction forward
Mean pairwise identity 95.83
Mean single sequence MFE -18.60
Consensus MFE -18.33
Energy contribution -18.33
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.55
Structure conservation index 0.99
SVM decision value 0.32
SVM RNA-class probability 0.689347
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3442014 96 + 22407834
AAGCGGAUUCGAGAUUGCAGAUUAUUAAAAAUCAACAGCAAAAACCGAAUGAAAAACCCAACACGAAAGUGAUACAUUUCCCAGCUGCAUUUUUCG
..(((((((((...((((.((((......))))....))))....)))))...........(((....))).............))))........ ( -17.60)
>DroSim_CAF1 31132 96 + 1
AAGCGGAUUCGAGAUUGCAGAUUAUUAAAAAUCAGCAGCAAAAACCGAAUAAAAAACCCAACACGAAAGUGAUACAUUUCCCAGCUGCGUUUUUCG
..((((....((((((((.((((......)))).)))........................(((....)))....)))))....))))........ ( -18.20)
>DroYak_CAF1 33424 95 + 1
AAGCGGAUUCGAGAUUGCGGAUUAUUAAAAAUCAGCAGCAAAAACCGAAUGAAAAAC-CAACACGAAAGUGAUACAUUUCCCAGCUGCAUUUUCCG
...((((((((......)))).............(((((..........((......-)).(((....)))............)))))....)))) ( -20.00)
>consensus
AAGCGGAUUCGAGAUUGCAGAUUAUUAAAAAUCAGCAGCAAAAACCGAAUGAAAAACCCAACACGAAAGUGAUACAUUUCCCAGCUGCAUUUUUCG
..(((((((((...((((.((((......))))....))))....)))))...........(((....))).............))))........ (-18.33 = -18.33 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:18 2006