| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 3,437,865 – 3,437,980 |
| Length | 115 |
| Max. P | 0.526761 |
| Location | 3,437,865 – 3,437,980 |
|---|---|
| Length | 115 |
| Sequences | 4 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 81.18 |
| Mean single sequence MFE | -26.09 |
| Consensus MFE | -15.71 |
| Energy contribution | -17.52 |
| Covariance contribution | 1.81 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.60 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.526761 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3437865 115 + 22407834 CAGAGAAACCUCCGCGGGGCUUAGAAAAACAAAAACAGCGCAAUAAUAAAGCGAAAA-AAUGACAAUAAAAAAUUGUCAACUUCUGGCCAGCUG-AACUCGGUCUAUUCCCCAGAGG ........((((...((((..((((..........((((((.........)).....-..(((((((.....)))))))...........))))-.......))))..)))).)))) ( -28.03) >DroAna_CAF1 31765 113 + 1 CACAAAUAGCUCCACAGGGCGCGGAAA-AAAACAGUAGCACAGAAAUACGGGAAAAU-AGUUGU-GCAAAAAAAUGUCCGCUUUU-GCCAGCUGUGACUCGGUCUAUUCCCCAAAGG ........((((....))))(.((((.-......(.....)(((....((((...((-(((((.-((((((..........))))-)))))))))..)))).))).)))).)..... ( -25.30) >DroSim_CAF1 26978 115 + 1 CAGAGAAACCUCCACGGGGCUUAGAAAAACAAAAACAGCGCAAUAAUAAAGCGAAAA-AAUGGCAAUAAAAAAUUGUCAACUUCUGGCCAGCUG-AACGCGGUCUAUUCCCCAGAGG ........((((...((((..((((..........((((((.........)))....-..(((((((.....)))))))....))).((.((..-...))))))))..)))).)))) ( -28.10) >DroYak_CAF1 29322 116 + 1 CAGAGAAACCACCAAGGGGCUUAGGAAAACAAAAACAGCGCAAUAAUAAAGCGAAAAAAAUGGCAAUAAAAAAUUGUCAACUUCUGGCCAGCUG-AACACGGUCUAUUCCCCCGAGG ...........((..((((..((((..........((((((.........))........(((((((.....)))))))...........))))-.......))))...))))..)) ( -22.93) >consensus CAGAGAAACCUCCACGGGGCUUAGAAAAACAAAAACAGCGCAAUAAUAAAGCGAAAA_AAUGGCAAUAAAAAAUUGUCAACUUCUGGCCAGCUG_AACUCGGUCUAUUCCCCAGAGG ........((((...((((..((((..........((((((.........))........(((((((.....)))))))...........))))........))))..)))).)))) (-15.71 = -17.52 + 1.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:14 2006